Strain Fitness in Dechlorosoma suillum PS around Dsui_0598

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0597 and Dsui_0598 are separated by 81 nucleotidesDsui_0598 and Dsui_0599 are separated by 136 nucleotidesDsui_0599 and Dsui_0600 are separated by 42 nucleotides Dsui_0597: Dsui_0597 - dihydroorotase, multifunctional complex type, at 593,866 to 595,110 _0597 Dsui_0598: Dsui_0598 - hypothetical protein, at 595,192 to 595,494 _0598 Dsui_0599: Dsui_0599 - response regulator of the LytR/AlgR family, at 595,631 to 596,344 _0599 Dsui_0600: Dsui_0600 - TIGR00251 family protein, at 596,387 to 596,677 _0600 Position (kb) 595 596Strain fitness (log2 ratio) -2 -1 0 1at 595.104 kb on + strandat 595.288 kb on + strand, within Dsui_0598at 595.292 kb on + strand, within Dsui_0598at 595.297 kb on + strand, within Dsui_0598at 595.305 kb on - strand, within Dsui_0598at 595.399 kb on - strand, within Dsui_0598at 595.539 kb on - strandat 595.751 kb on + strand, within Dsui_0599at 595.795 kb on - strandat 595.928 kb on + strand, within Dsui_0599at 596.051 kb on + strand, within Dsui_0599at 596.069 kb on + strand, within Dsui_0599at 596.088 kb on - strand, within Dsui_0599at 596.105 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.107 kb on + strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.115 kb on - strand, within Dsui_0599at 596.138 kb on + strand, within Dsui_0599at 596.206 kb on + strand, within Dsui_0599at 596.214 kb on - strand, within Dsui_0599at 596.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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595,104 + -0.2
595,288 + Dsui_0598 0.32 -2.2
595,292 + Dsui_0598 0.33 -1.7
595,297 + Dsui_0598 0.35 -2.2
595,305 - Dsui_0598 0.37 -2.2
595,399 - Dsui_0598 0.68 -2.0
595,539 - -0.4
595,751 + Dsui_0599 0.17 -0.4
595,795 - +0.6
595,928 + Dsui_0599 0.42 -0.4
596,051 + Dsui_0599 0.59 -0.4
596,069 + Dsui_0599 0.61 -2.2
596,088 - Dsui_0599 0.64 +0.0
596,105 + Dsui_0599 0.66 +0.6
596,107 + Dsui_0599 0.67 +0.0
596,107 + Dsui_0599 0.67 -1.0
596,107 + Dsui_0599 0.67 -0.4
596,107 + Dsui_0599 0.67 -0.4
596,107 + Dsui_0599 0.67 -1.4
596,107 + Dsui_0599 0.67 +0.0
596,107 + Dsui_0599 0.67 -1.4
596,107 + Dsui_0599 0.67 -0.4
596,115 - Dsui_0599 0.68 -0.4
596,115 - Dsui_0599 0.68 +0.0
596,115 - Dsui_0599 0.68 -1.7
596,115 - Dsui_0599 0.68 -0.7
596,115 - Dsui_0599 0.68 -0.7
596,115 - Dsui_0599 0.68 -0.8
596,115 - Dsui_0599 0.68 -0.4
596,138 + Dsui_0599 0.71 -1.4
596,206 + Dsui_0599 0.81 -0.1
596,214 - Dsui_0599 0.82 -0.9
596,348 - +0.1

Or see this region's nucleotide sequence