Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0454 and Dsui_0455 are separated by 3 nucleotides Dsui_0455 and Dsui_0456 are separated by 90 nucleotides Dsui_0456 and Dsui_0457 are separated by 7 nucleotides Dsui_0457 and Dsui_0458 are separated by 44 nucleotides
Dsui_0454: Dsui_0454 - hypothetical protein, at 459,194 to 460,024
_0454
Dsui_0455: Dsui_0455 - putative integral membrane protein, at 460,028 to 460,786
_0455
Dsui_0456: Dsui_0456 - homoserine kinase, Neisseria type, at 460,877 to 461,818
_0456
Dsui_0457: Dsui_0457 - Protein of unknown function (DUF2782), at 461,826 to 462,176
_0457
Dsui_0458: Dsui_0458 - TIGR00730 family protein, at 462,221 to 462,949
_0458
Position (kb) 460
461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 459.942 kb on - strand at 459.973 kb on - strand at 460.021 kb on + strand at 460.059 kb on + strand at 460.067 kb on - strand at 460.067 kb on - strand at 460.140 kb on + strand at 460.148 kb on - strand, within Dsui_0455 at 460.226 kb on - strand, within Dsui_0455 at 460.241 kb on - strand, within Dsui_0455 at 460.435 kb on + strand at 460.439 kb on - strand, within Dsui_0455 at 460.449 kb on - strand, within Dsui_0455 at 460.609 kb on - strand, within Dsui_0455 at 460.611 kb on + strand at 460.619 kb on - strand, within Dsui_0455 at 460.645 kb on - strand, within Dsui_0455 at 460.650 kb on + strand at 460.926 kb on - strand at 461.120 kb on - strand, within Dsui_0456 at 461.139 kb on - strand, within Dsui_0456 at 461.226 kb on + strand, within Dsui_0456 at 461.257 kb on - strand, within Dsui_0456 at 461.276 kb on + strand, within Dsui_0456 at 461.290 kb on - strand, within Dsui_0456 at 461.444 kb on + strand, within Dsui_0456 at 461.452 kb on - strand, within Dsui_0456 at 461.456 kb on + strand, within Dsui_0456 at 461.551 kb on + strand, within Dsui_0456 at 461.655 kb on + strand, within Dsui_0456 at 461.944 kb on - strand, within Dsui_0457 at 461.950 kb on - strand, within Dsui_0457 at 462.132 kb on + strand, within Dsui_0457 at 462.243 kb on - strand at 462.254 kb on - strand at 462.259 kb on + strand at 462.267 kb on - strand at 462.273 kb on + strand at 462.329 kb on + strand, within Dsui_0458 at 462.334 kb on + strand, within Dsui_0458 at 462.334 kb on + strand at 462.342 kb on - strand, within Dsui_0458 at 462.342 kb on - strand, within Dsui_0458 at 462.492 kb on - strand, within Dsui_0458 at 462.517 kb on + strand at 462.525 kb on - strand, within Dsui_0458 at 462.601 kb on - strand, within Dsui_0458 at 462.728 kb on - strand, within Dsui_0458 at 462.754 kb on + strand, within Dsui_0458 at 462.762 kb on - strand, within Dsui_0458 at 462.774 kb on + strand at 462.791 kb on + strand, within Dsui_0458
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 459,942 - -2.5 459,973 - -3.9 460,021 + +0.6 460,059 + -1.4 460,067 - -0.7 460,067 - -1.4 460,140 + +0.6 460,148 - Dsui_0455 0.16 -0.8 460,226 - Dsui_0455 0.26 -0.8 460,241 - Dsui_0455 0.28 -0.9 460,435 + +0.6 460,439 - Dsui_0455 0.54 -1.0 460,449 - Dsui_0455 0.55 -1.0 460,609 - Dsui_0455 0.77 -1.8 460,611 + +0.6 460,619 - Dsui_0455 0.78 -1.0 460,645 - Dsui_0455 0.81 -1.9 460,650 + +0.6 460,926 - +0.8 461,120 - Dsui_0456 0.26 +0.2 461,139 - Dsui_0456 0.28 +0.5 461,226 + Dsui_0456 0.37 -1.4 461,257 - Dsui_0456 0.40 +0.7 461,276 + Dsui_0456 0.42 -1.0 461,290 - Dsui_0456 0.44 +0.7 461,444 + Dsui_0456 0.60 -0.4 461,452 - Dsui_0456 0.61 +0.9 461,456 + Dsui_0456 0.61 +0.6 461,551 + Dsui_0456 0.72 -1.4 461,655 + Dsui_0456 0.83 -0.4 461,944 - Dsui_0457 0.34 +0.3 461,950 - Dsui_0457 0.35 +0.2 462,132 + Dsui_0457 0.87 +0.6 462,243 - -1.3 462,254 - -0.9 462,259 + +0.6 462,267 - -0.8 462,273 + +0.6 462,329 + Dsui_0458 0.15 +0.6 462,334 + Dsui_0458 0.16 -0.4 462,334 + +0.6 462,342 - Dsui_0458 0.17 -0.9 462,342 - Dsui_0458 0.17 -0.2 462,492 - Dsui_0458 0.37 -0.5 462,517 + +0.6 462,525 - Dsui_0458 0.42 +0.6 462,601 - Dsui_0458 0.52 -0.0 462,728 - Dsui_0458 0.70 -0.5 462,754 + Dsui_0458 0.73 -1.0 462,762 - Dsui_0458 0.74 -0.8 462,774 + +0.6 462,791 + Dsui_0458 0.78 -0.4
Or see this region's nucleotide sequence