Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0432 and Dsui_0433 are separated by 93 nucleotides Dsui_0433 and Dsui_0434 are separated by 51 nucleotides
Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199
_0432
Dsui_0433: Dsui_0433 - collagenase-like protease, at 439,293 to 440,606
_0433
Dsui_0434: Dsui_0434 - ribonuclease, Rne/Rng family, at 440,658 to 442,139
_0434
Position (kb) 439
440
441 Strain fitness (log2 ratio) -2
-1
0
1 at 438.331 kb on + strand, within Dsui_0432 at 438.390 kb on + strand at 438.506 kb on - strand, within Dsui_0432 at 439.022 kb on + strand, within Dsui_0432 at 439.157 kb on + strand at 439.203 kb on - strand at 439.233 kb on + strand at 439.242 kb on + strand at 439.299 kb on - strand at 439.540 kb on - strand, within Dsui_0433 at 439.784 kb on - strand, within Dsui_0433 at 439.814 kb on + strand, within Dsui_0433 at 439.950 kb on - strand at 439.996 kb on - strand, within Dsui_0433 at 440.076 kb on - strand, within Dsui_0433 at 440.134 kb on - strand, within Dsui_0433 at 440.266 kb on - strand, within Dsui_0433 at 440.291 kb on - strand, within Dsui_0433 at 440.384 kb on + strand, within Dsui_0433 at 440.392 kb on - strand, within Dsui_0433 at 440.447 kb on + strand, within Dsui_0433 at 440.455 kb on - strand, within Dsui_0433 at 440.619 kb on + strand at 440.838 kb on + strand, within Dsui_0434 at 440.839 kb on + strand, within Dsui_0434 at 440.881 kb on - strand, within Dsui_0434 at 440.961 kb on + strand, within Dsui_0434 at 441.140 kb on - strand, within Dsui_0434 at 441.408 kb on + strand, within Dsui_0434 at 441.416 kb on - strand at 441.454 kb on - strand at 441.504 kb on + strand, within Dsui_0434
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 438,331 + Dsui_0432 0.19 +0.6 438,390 + +0.6 438,506 - Dsui_0432 0.36 -0.2 439,022 + Dsui_0432 0.83 -0.4 439,157 + -1.0 439,203 - -1.9 439,233 + -0.4 439,242 + -0.4 439,299 - -0.4 439,540 - Dsui_0433 0.19 -0.5 439,784 - Dsui_0433 0.37 -0.3 439,814 + Dsui_0433 0.40 -0.4 439,950 - +0.6 439,996 - Dsui_0433 0.54 -1.6 440,076 - Dsui_0433 0.60 -0.9 440,134 - Dsui_0433 0.64 -2.6 440,266 - Dsui_0433 0.74 -0.1 440,291 - Dsui_0433 0.76 +0.6 440,384 + Dsui_0433 0.83 -0.2 440,392 - Dsui_0433 0.84 -0.1 440,447 + Dsui_0433 0.88 -1.7 440,455 - Dsui_0433 0.88 -0.9 440,619 + -1.0 440,838 + Dsui_0434 0.12 -2.2 440,839 + Dsui_0434 0.12 -2.2 440,881 - Dsui_0434 0.15 -0.4 440,961 + Dsui_0434 0.20 -1.5 441,140 - Dsui_0434 0.33 -1.0 441,408 + Dsui_0434 0.51 -2.0 441,416 - +0.6 441,454 - +0.6 441,504 + Dsui_0434 0.57 -2.1
Or see this region's nucleotide sequence