Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0417 and Dsui_0418 are separated by 34 nucleotides Dsui_0418 and Dsui_0419 overlap by 8 nucleotides Dsui_0419 and Dsui_0420 are separated by 141 nucleotides
Dsui_0417: Dsui_0417 - gamma-glutamyltransferase, at 417,940 to 419,529
_0417
Dsui_0418: Dsui_0418 - putative Na+-dependent transporter, at 419,564 to 420,538
_0418
Dsui_0419: Dsui_0419 - hypothetical protein, at 420,531 to 421,073
_0419
Dsui_0420: Dsui_0420 - transcriptional regulator with HTH domain and aminotransferase domain, at 421,215 to 422,624
_0420
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1 at 418.844 kb on + strand at 418.919 kb on + strand, within Dsui_0417 at 419.045 kb on + strand at 419.123 kb on + strand, within Dsui_0417 at 419.131 kb on - strand at 419.131 kb on - strand at 419.172 kb on - strand, within Dsui_0417 at 419.324 kb on + strand, within Dsui_0417 at 419.327 kb on - strand at 419.489 kb on + strand at 419.533 kb on - strand at 419.593 kb on + strand at 419.782 kb on - strand, within Dsui_0418 at 419.824 kb on - strand at 419.868 kb on + strand, within Dsui_0418 at 419.922 kb on + strand at 419.935 kb on - strand, within Dsui_0418 at 419.966 kb on - strand, within Dsui_0418 at 419.997 kb on - strand, within Dsui_0418 at 420.004 kb on - strand, within Dsui_0418 at 420.017 kb on - strand at 420.083 kb on - strand, within Dsui_0418 at 420.098 kb on + strand, within Dsui_0418 at 420.195 kb on - strand, within Dsui_0418 at 420.195 kb on - strand at 420.222 kb on + strand at 420.270 kb on + strand, within Dsui_0418 at 420.278 kb on - strand, within Dsui_0418 at 420.283 kb on - strand, within Dsui_0418 at 420.508 kb on - strand at 420.516 kb on + strand at 420.548 kb on + strand at 420.760 kb on - strand, within Dsui_0419 at 420.812 kb on + strand at 420.972 kb on - strand, within Dsui_0419 at 421.013 kb on - strand, within Dsui_0419 at 421.048 kb on + strand at 421.055 kb on - strand at 421.056 kb on - strand at 421.068 kb on + strand at 421.068 kb on + strand at 421.076 kb on - strand at 421.090 kb on - strand at 421.178 kb on - strand at 421.196 kb on - strand at 421.216 kb on + strand at 421.244 kb on + strand at 421.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 418,844 + -1.0 418,919 + Dsui_0417 0.62 -0.4 419,045 + +0.6 419,123 + Dsui_0417 0.74 +0.6 419,131 - -0.4 419,131 - -0.4 419,172 - Dsui_0417 0.77 -1.0 419,324 + Dsui_0417 0.87 +0.6 419,327 - +0.6 419,489 + -1.0 419,533 - -0.4 419,593 + +0.6 419,782 - Dsui_0418 0.22 -0.4 419,824 - +0.6 419,868 + Dsui_0418 0.31 -0.4 419,922 + +0.6 419,935 - Dsui_0418 0.38 -1.7 419,966 - Dsui_0418 0.41 -2.0 419,997 - Dsui_0418 0.44 -1.0 420,004 - Dsui_0418 0.45 -1.7 420,017 - +0.6 420,083 - Dsui_0418 0.53 -1.4 420,098 + Dsui_0418 0.55 -0.4 420,195 - Dsui_0418 0.65 -2.0 420,195 - -0.4 420,222 + +0.6 420,270 + Dsui_0418 0.72 -1.4 420,278 - Dsui_0418 0.73 -0.4 420,283 - Dsui_0418 0.74 -0.4 420,508 - -2.2 420,516 + -0.4 420,548 + +0.6 420,760 - Dsui_0419 0.42 -1.4 420,812 + -0.4 420,972 - Dsui_0419 0.81 -0.4 421,013 - Dsui_0419 0.89 -0.4 421,048 + -2.7 421,055 - -1.4 421,056 - -1.4 421,068 + -1.0 421,068 + -1.7 421,076 - +0.6 421,090 - -0.4 421,178 - +0.6 421,196 - +0.6 421,216 + -0.4 421,244 + -1.0 421,251 - -0.4
Or see this region's nucleotide sequence