Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26055 and BWI76_RS26060 are separated by 89 nucleotides BWI76_RS26060 and BWI76_RS26065 are separated by 3 nucleotides BWI76_RS26065 and BWI76_RS26070 overlap by 8 nucleotides
BWI76_RS26055: BWI76_RS26055 - siroheme synthase, at 5,383,966 to 5,385,339
_RS26055
BWI76_RS26060: BWI76_RS26060 - tryptophan--tRNA ligase, at 5,385,429 to 5,386,433
_RS26060
BWI76_RS26065: BWI76_RS26065 - phosphoglycolate phosphatase, at 5,386,437 to 5,387,186
_RS26065
BWI76_RS26070: BWI76_RS26070 - ribulose-phosphate 3-epimerase, at 5,387,179 to 5,387,856
_RS26070
Position (kb)
5385
5386
5387 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5384.441 kb on - strand, within BWI76_RS26055 at 5384.653 kb on - strand, within BWI76_RS26055 at 5384.661 kb on - strand, within BWI76_RS26055 at 5384.737 kb on - strand, within BWI76_RS26055 at 5384.782 kb on + strand, within BWI76_RS26055 at 5384.790 kb on - strand, within BWI76_RS26055 at 5384.805 kb on - strand, within BWI76_RS26055 at 5384.904 kb on + strand, within BWI76_RS26055 at 5385.042 kb on + strand, within BWI76_RS26055 at 5385.042 kb on + strand, within BWI76_RS26055 at 5385.042 kb on + strand, within BWI76_RS26055 at 5385.050 kb on - strand, within BWI76_RS26055 at 5385.195 kb on - strand, within BWI76_RS26055 at 5385.216 kb on - strand at 5385.230 kb on + strand at 5385.238 kb on - strand at 5385.238 kb on - strand at 5385.304 kb on - strand at 5385.353 kb on + strand at 5385.427 kb on + strand at 5385.428 kb on - strand at 5385.440 kb on - strand at 5385.542 kb on - strand, within BWI76_RS26060 at 5385.542 kb on - strand, within BWI76_RS26060 at 5385.564 kb on + strand, within BWI76_RS26060 at 5385.610 kb on + strand, within BWI76_RS26060 at 5385.706 kb on - strand, within BWI76_RS26060 at 5385.867 kb on - strand, within BWI76_RS26060 at 5386.074 kb on - strand, within BWI76_RS26060 at 5386.074 kb on - strand, within BWI76_RS26060 at 5386.074 kb on - strand, within BWI76_RS26060 at 5386.190 kb on + strand, within BWI76_RS26060 at 5386.236 kb on - strand, within BWI76_RS26060 at 5386.258 kb on + strand, within BWI76_RS26060 at 5386.266 kb on - strand, within BWI76_RS26060 at 5386.266 kb on - strand, within BWI76_RS26060 at 5386.393 kb on + strand at 5386.393 kb on + strand at 5386.401 kb on - strand at 5386.542 kb on - strand, within BWI76_RS26065 at 5386.657 kb on + strand, within BWI76_RS26065 at 5386.746 kb on + strand, within BWI76_RS26065 at 5386.993 kb on + strand, within BWI76_RS26065 at 5387.143 kb on - strand at 5387.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 5,384,441 - BWI76_RS26055 0.35 -1.1 5,384,653 - BWI76_RS26055 0.50 -2.6 5,384,661 - BWI76_RS26055 0.51 +1.0 5,384,737 - BWI76_RS26055 0.56 -0.5 5,384,782 + BWI76_RS26055 0.59 -3.0 5,384,790 - BWI76_RS26055 0.60 -2.7 5,384,805 - BWI76_RS26055 0.61 -1.5 5,384,904 + BWI76_RS26055 0.68 -3.8 5,385,042 + BWI76_RS26055 0.78 -1.5 5,385,042 + BWI76_RS26055 0.78 -0.4 5,385,042 + BWI76_RS26055 0.78 -3.7 5,385,050 - BWI76_RS26055 0.79 -2.3 5,385,195 - BWI76_RS26055 0.89 -2.3 5,385,216 - -2.1 5,385,230 + -4.0 5,385,238 - +0.8 5,385,238 - -2.8 5,385,304 - -1.5 5,385,353 + +0.1 5,385,427 + +0.1 5,385,428 - +1.2 5,385,440 - -1.1 5,385,542 - BWI76_RS26060 0.11 -1.4 5,385,542 - BWI76_RS26060 0.11 -1.0 5,385,564 + BWI76_RS26060 0.13 -0.9 5,385,610 + BWI76_RS26060 0.18 -1.5 5,385,706 - BWI76_RS26060 0.28 -0.8 5,385,867 - BWI76_RS26060 0.44 -2.7 5,386,074 - BWI76_RS26060 0.64 -1.2 5,386,074 - BWI76_RS26060 0.64 -2.9 5,386,074 - BWI76_RS26060 0.64 -1.2 5,386,190 + BWI76_RS26060 0.76 -0.7 5,386,236 - BWI76_RS26060 0.80 -0.2 5,386,258 + BWI76_RS26060 0.82 -1.4 5,386,266 - BWI76_RS26060 0.83 -1.5 5,386,266 - BWI76_RS26060 0.83 -0.7 5,386,393 + -4.6 5,386,393 + -0.9 5,386,401 - -2.4 5,386,542 - BWI76_RS26065 0.14 -0.9 5,386,657 + BWI76_RS26065 0.29 -1.8 5,386,746 + BWI76_RS26065 0.41 -1.7 5,386,993 + BWI76_RS26065 0.74 -2.6 5,387,143 - +0.1 5,387,194 - +0.4
Or see this region's nucleotide sequence