Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19345

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19340 and BWI76_RS19345 are separated by 9 nucleotidesBWI76_RS19345 and BWI76_RS19350 are separated by 206 nucleotides BWI76_RS19340: BWI76_RS19340 - xylulokinase, at 4,029,434 to 4,030,897 _RS19340 BWI76_RS19345: BWI76_RS19345 - D-arabinitol 4-dehydrogenase, at 4,030,907 to 4,032,274 _RS19345 BWI76_RS19350: BWI76_RS19350 - DeoR family transcriptional regulator, at 4,032,481 to 4,033,422 _RS19350 Position (kb) 4030 4031 4032 4033Strain fitness (log2 ratio) -2 -1 0 1 2at 4029.915 kb on + strand, within BWI76_RS19340at 4030.277 kb on + strand, within BWI76_RS19340at 4030.302 kb on - strand, within BWI76_RS19340at 4030.325 kb on - strand, within BWI76_RS19340at 4030.380 kb on - strand, within BWI76_RS19340at 4030.467 kb on - strand, within BWI76_RS19340at 4030.729 kb on - strand, within BWI76_RS19340at 4030.771 kb on + strandat 4031.063 kb on - strand, within BWI76_RS19345at 4031.247 kb on - strand, within BWI76_RS19345at 4031.292 kb on - strand, within BWI76_RS19345at 4031.377 kb on - strand, within BWI76_RS19345at 4031.391 kb on - strand, within BWI76_RS19345at 4031.779 kb on + strand, within BWI76_RS19345at 4031.975 kb on - strand, within BWI76_RS19345at 4032.236 kb on + strandat 4033.038 kb on - strand, within BWI76_RS19350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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4,029,915 + BWI76_RS19340 0.33 -0.9
4,030,277 + BWI76_RS19340 0.58 -0.8
4,030,302 - BWI76_RS19340 0.59 -0.5
4,030,325 - BWI76_RS19340 0.61 +1.8
4,030,380 - BWI76_RS19340 0.65 -0.1
4,030,467 - BWI76_RS19340 0.71 +0.2
4,030,729 - BWI76_RS19340 0.88 +0.6
4,030,771 + -0.1
4,031,063 - BWI76_RS19345 0.11 -0.1
4,031,247 - BWI76_RS19345 0.25 -0.0
4,031,292 - BWI76_RS19345 0.28 -0.0
4,031,377 - BWI76_RS19345 0.34 +0.0
4,031,391 - BWI76_RS19345 0.35 +0.3
4,031,779 + BWI76_RS19345 0.64 -0.4
4,031,975 - BWI76_RS19345 0.78 +0.4
4,032,236 + -1.0
4,033,038 - BWI76_RS19350 0.59 -1.9

Or see this region's nucleotide sequence