Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18305 and BWI76_RS18310 are separated by 190 nucleotides BWI76_RS18310 and BWI76_RS18315 are separated by 13 nucleotides BWI76_RS18315 and BWI76_RS18320 are separated by 38 nucleotides BWI76_RS18320 and BWI76_RS18325 are separated by 151 nucleotides BWI76_RS18325 and BWI76_RS18330 are separated by 57 nucleotides
BWI76_RS18305: BWI76_RS18305 - dihydrodipicolinate synthase family protein, at 3,803,453 to 3,804,340
_RS18305
BWI76_RS18310: BWI76_RS18310 - tRNA-Leu, at 3,804,531 to 3,804,617
_RS18310
BWI76_RS18315: BWI76_RS18315 - tRNA-Cys, at 3,804,631 to 3,804,704
_RS18315
BWI76_RS18320: BWI76_RS18320 - tRNA-Gly, at 3,804,743 to 3,804,818
_RS18320
BWI76_RS18325: BWI76_RS18325 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,804,970 to 3,805,518
_RS18325
BWI76_RS18330: BWI76_RS18330 - excinuclease ABC subunit C, at 3,805,576 to 3,807,408
_RS18330
Position (kb)
3804
3805
3806 Strain fitness (log2 ratio)
-1
0
1 at 3803.975 kb on - strand, within BWI76_RS18305 at 3804.128 kb on + strand, within BWI76_RS18305 at 3805.581 kb on + strand at 3805.828 kb on - strand, within BWI76_RS18330 at 3805.859 kb on - strand, within BWI76_RS18330 at 3805.859 kb on - strand, within BWI76_RS18330 at 3806.088 kb on + strand, within BWI76_RS18330
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,803,975 - BWI76_RS18305 0.59 -0.1 3,804,128 + BWI76_RS18305 0.76 -1.0 3,805,581 + +0.1 3,805,828 - BWI76_RS18330 0.14 +0.6 3,805,859 - BWI76_RS18330 0.15 -0.0 3,805,859 - BWI76_RS18330 0.15 -0.3 3,806,088 + BWI76_RS18330 0.28 +0.4
Or see this region's nucleotide sequence