Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09620

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09615 and BWI76_RS09620 are separated by 138 nucleotidesBWI76_RS09620 and BWI76_RS09625 overlap by 73 nucleotidesBWI76_RS09625 and BWI76_RS09630 are separated by 0 nucleotides BWI76_RS09615: BWI76_RS09615 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,011,511 to 2,013,793 _RS09615 BWI76_RS09620: BWI76_RS09620 - translation initiation factor IF-1, at 2,013,932 to 2,014,150 _RS09620 BWI76_RS09625: BWI76_RS09625 - hypothetical protein, at 2,014,078 to 2,014,429 _RS09625 BWI76_RS09630: BWI76_RS09630 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,014,430 to 2,015,134 _RS09630 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -1 0 1at 2013.343 kb on + strand, within BWI76_RS09615at 2013.483 kb on - strand, within BWI76_RS09615at 2014.300 kb on + strand, within BWI76_RS09625at 2014.875 kb on - strand, within BWI76_RS09630at 2014.886 kb on - strand, within BWI76_RS09630at 2015.107 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
2,013,343 + BWI76_RS09615 0.80 -1.1
2,013,483 - BWI76_RS09615 0.86 -0.7
2,014,300 + BWI76_RS09625 0.63 -0.2
2,014,875 - BWI76_RS09630 0.63 -0.2
2,014,886 - BWI76_RS09630 0.65 -0.6
2,015,107 + -0.0

Or see this region's nucleotide sequence