Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29885

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29880 and AZOBR_RS29885 are separated by 111 nucleotidesAZOBR_RS29885 and AZOBR_RS29890 overlap by 11 nucleotidesAZOBR_RS29890 and AZOBR_RS29895 are separated by 4 nucleotidesAZOBR_RS29895 and AZOBR_RS29900 overlap by 4 nucleotides AZOBR_RS29880: AZOBR_RS29880 - flagellin, at 49,689 to 50,933 _RS29880 AZOBR_RS29885: AZOBR_RS29885 - flagellar basal body protein FliL, at 51,045 to 51,437 _RS29885 AZOBR_RS29890: AZOBR_RS29890 - flagellar protein, at 51,427 to 51,864 _RS29890 AZOBR_RS29895: AZOBR_RS29895 - hypothetical protein, at 51,869 to 52,246 _RS29895 AZOBR_RS29900: AZOBR_RS29900 - flagellar basal body rod protein FlgG, at 52,243 to 53,037 _RS29900 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1at 50.100 kb on + strand, within AZOBR_RS29880at 50.100 kb on + strand, within AZOBR_RS29880at 50.184 kb on + strand, within AZOBR_RS29880at 50.184 kb on + strand, within AZOBR_RS29880at 50.185 kb on - strand, within AZOBR_RS29880at 50.419 kb on - strand, within AZOBR_RS29880at 50.986 kb on - strandat 51.033 kb on + strandat 51.033 kb on + strandat 51.034 kb on - strandat 51.034 kb on - strandat 51.034 kb on - strandat 51.105 kb on + strand, within AZOBR_RS29885at 51.105 kb on + strand, within AZOBR_RS29885at 51.426 kb on + strandat 51.426 kb on + strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.506 kb on - strand, within AZOBR_RS29890at 51.643 kb on + strand, within AZOBR_RS29890at 51.644 kb on - strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.680 kb on - strand, within AZOBR_RS29890at 51.680 kb on - strand, within AZOBR_RS29890at 51.752 kb on - strand, within AZOBR_RS29890at 51.752 kb on - strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 52.178 kb on + strand, within AZOBR_RS29895at 52.178 kb on + strand, within AZOBR_RS29895at 52.261 kb on + strandat 52.262 kb on - strandat 52.292 kb on - strandat 52.339 kb on + strand, within AZOBR_RS29900at 52.339 kb on + strand, within AZOBR_RS29900at 52.340 kb on - strand, within AZOBR_RS29900at 52.402 kb on + strand, within AZOBR_RS29900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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50,100 + AZOBR_RS29880 0.33 -2.4
50,100 + AZOBR_RS29880 0.33 -0.0
50,184 + AZOBR_RS29880 0.40 +0.0
50,184 + AZOBR_RS29880 0.40 +0.2
50,185 - AZOBR_RS29880 0.40 -0.4
50,419 - AZOBR_RS29880 0.59 -0.0
50,986 - -0.3
51,033 + -0.3
51,033 + -0.7
51,034 - +0.6
51,034 - -1.1
51,034 - +0.2
51,105 + AZOBR_RS29885 0.15 +0.4
51,105 + AZOBR_RS29885 0.15 +0.8
51,426 + +0.6
51,426 + -0.3
51,427 - -0.7
51,427 - +0.6
51,427 - +0.1
51,506 - AZOBR_RS29890 0.18 -0.1
51,643 + AZOBR_RS29890 0.49 +0.4
51,644 - AZOBR_RS29890 0.50 -0.3
51,679 + AZOBR_RS29890 0.58 +0.0
51,679 + AZOBR_RS29890 0.58 -1.3
51,679 + AZOBR_RS29890 0.58 +1.0
51,680 - AZOBR_RS29890 0.58 +0.6
51,680 - AZOBR_RS29890 0.58 +1.1
51,752 - AZOBR_RS29890 0.74 +1.1
51,752 - AZOBR_RS29890 0.74 -0.0
51,754 + AZOBR_RS29890 0.75 +0.1
51,754 + AZOBR_RS29890 0.75 +1.0
51,754 + AZOBR_RS29890 0.75 -0.5
51,754 + AZOBR_RS29890 0.75 -0.1
51,755 - AZOBR_RS29890 0.75 -0.1
51,755 - AZOBR_RS29890 0.75 +0.6
51,755 - AZOBR_RS29890 0.75 +0.1
51,755 - AZOBR_RS29890 0.75 -0.2
51,755 - AZOBR_RS29890 0.75 -0.1
52,178 + AZOBR_RS29895 0.82 -0.1
52,178 + AZOBR_RS29895 0.82 -0.5
52,261 + -1.1
52,262 - +0.7
52,292 - -0.3
52,339 + AZOBR_RS29900 0.12 +0.4
52,339 + AZOBR_RS29900 0.12 +0.4
52,340 - AZOBR_RS29900 0.12 +0.4
52,402 + AZOBR_RS29900 0.20 +0.2

Or see this region's nucleotide sequence