Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18860

Experiment: LB; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS18850 and AZOBR_RS18855 are separated by 209 nucleotidesAZOBR_RS18855 and AZOBR_RS18860 overlap by 4 nucleotidesAZOBR_RS18860 and AZOBR_RS18865 are separated by 112 nucleotidesAZOBR_RS18865 and AZOBR_RS18870 are separated by 16 nucleotides AZOBR_RS18850: AZOBR_RS18850 - arabinose 5-phosphate isomerase, at 1,000,400 to 1,001,428 _RS18850 AZOBR_RS18855: AZOBR_RS18855 - hypothetical protein, at 1,001,638 to 1,002,192 _RS18855 AZOBR_RS18860: AZOBR_RS18860 - hypothetical protein, at 1,002,189 to 1,003,088 _RS18860 AZOBR_RS18865: AZOBR_RS18865 - ABC transporter ATP-binding protein, at 1,003,201 to 1,003,932 _RS18865 AZOBR_RS18870: AZOBR_RS18870 - RNA polymerase sigma54 factor, at 1,003,949 to 1,005,526 _RS18870 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -1 0 1at 1003.931 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
remove
1,003,931 - +1.1

Or see this region's nucleotide sequence