Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18835 and AZOBR_RS18840 are separated by 229 nucleotides AZOBR_RS18840 and AZOBR_RS18845 are separated by 123 nucleotides AZOBR_RS18845 and AZOBR_RS18850 are separated by 184 nucleotides
AZOBR_RS18835: AZOBR_RS18835 - 3-beta-hydroxy-delta(5)-steroid dehydrogenase, at 998,160 to 999,149
_RS18835
AZOBR_RS18840: AZOBR_RS18840 - tRNA-Leu, at 999,379 to 999,465
_RS18840
AZOBR_RS18845: AZOBR_RS18845 - 3'-5' exonuclease, at 999,589 to 1,000,215
_RS18845
AZOBR_RS18850: AZOBR_RS18850 - arabinose 5-phosphate isomerase, at 1,000,400 to 1,001,428
_RS18850
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1 at 998.759 kb on - strand, within AZOBR_RS18835 at 998.897 kb on - strand, within AZOBR_RS18835 at 998.897 kb on - strand, within AZOBR_RS18835 at 999.237 kb on + strand at 999.237 kb on + strand at 999.237 kb on + strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.238 kb on - strand at 999.239 kb on + strand at 999.239 kb on + strand at 999.240 kb on - strand at 999.242 kb on - strand at 999.253 kb on - strand at 999.363 kb on - strand at 999.466 kb on + strand at 999.466 kb on + strand at 999.470 kb on + strand at 999.519 kb on + strand at 999.568 kb on + strand at 999.568 kb on + strand at 1000.248 kb on + strand at 1000.248 kb on + strand at 1000.298 kb on + strand at 1001.092 kb on + strand, within AZOBR_RS18850 at 1001.092 kb on + strand, within AZOBR_RS18850 at 1001.092 kb on + strand, within AZOBR_RS18850
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 998,759 - AZOBR_RS18835 0.61 +1.6 998,897 - AZOBR_RS18835 0.74 +1.2 998,897 - AZOBR_RS18835 0.74 +0.5 999,237 + +0.2 999,237 + -0.4 999,237 + +0.7 999,238 - +1.1 999,238 - -0.6 999,238 - -0.2 999,238 - +0.1 999,238 - +1.0 999,238 - -0.1 999,238 - +0.2 999,238 - +0.6 999,238 - -0.7 999,238 - +0.6 999,239 + -0.4 999,239 + -0.9 999,240 - +1.2 999,242 - +0.1 999,253 - -0.0 999,363 - -1.1 999,466 + +0.4 999,466 + +0.0 999,470 + +0.8 999,519 + +0.6 999,568 + -0.0 999,568 + -0.9 1,000,248 + -0.3 1,000,248 + +0.2 1,000,298 + -0.6 1,001,092 + AZOBR_RS18850 0.67 -2.4 1,001,092 + AZOBR_RS18850 0.67 -2.5 1,001,092 + AZOBR_RS18850 0.67 -1.1
Or see this region's nucleotide sequence