Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14195

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14190 and AZOBR_RS14195 are separated by 185 nucleotidesAZOBR_RS14195 and AZOBR_RS14200 are separated by 219 nucleotidesAZOBR_RS14200 and AZOBR_RS14205 are separated by 119 nucleotides AZOBR_RS14190: AZOBR_RS14190 - chitin deacetylase, at 2,985,364 to 2,986,302 _RS14190 AZOBR_RS14195: AZOBR_RS14195 - hypothetical protein, at 2,986,488 to 2,987,624 _RS14195 AZOBR_RS14200: AZOBR_RS14200 - chemotaxis protein CheY, at 2,987,844 to 2,988,260 _RS14200 AZOBR_RS14205: AZOBR_RS14205 - exonuclease, at 2,988,380 to 2,990,464 _RS14205 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -2 -1 0 1 2at 2985.662 kb on - strand, within AZOBR_RS14190at 2985.853 kb on + strand, within AZOBR_RS14190at 2985.853 kb on + strand, within AZOBR_RS14190at 2985.854 kb on - strand, within AZOBR_RS14190at 2985.854 kb on - strand, within AZOBR_RS14190at 2985.913 kb on + strand, within AZOBR_RS14190at 2985.913 kb on + strand, within AZOBR_RS14190at 2985.914 kb on - strand, within AZOBR_RS14190at 2985.914 kb on - strand, within AZOBR_RS14190at 2985.914 kb on - strand, within AZOBR_RS14190at 2985.914 kb on - strand, within AZOBR_RS14190at 2985.928 kb on + strand, within AZOBR_RS14190at 2985.928 kb on + strand, within AZOBR_RS14190at 2985.928 kb on + strand, within AZOBR_RS14190at 2985.929 kb on - strand, within AZOBR_RS14190at 2985.946 kb on + strand, within AZOBR_RS14190at 2985.989 kb on - strand, within AZOBR_RS14190at 2986.060 kb on + strand, within AZOBR_RS14190at 2986.060 kb on + strand, within AZOBR_RS14190at 2986.189 kb on + strand, within AZOBR_RS14190at 2986.189 kb on + strand, within AZOBR_RS14190at 2986.190 kb on - strand, within AZOBR_RS14190at 2986.190 kb on - strand, within AZOBR_RS14190at 2986.387 kb on + strandat 2986.387 kb on + strandat 2986.393 kb on - strandat 2986.393 kb on - strandat 2987.394 kb on + strand, within AZOBR_RS14195at 2987.394 kb on + strand, within AZOBR_RS14195at 2987.394 kb on + strand, within AZOBR_RS14195at 2987.782 kb on + strandat 2988.063 kb on + strand, within AZOBR_RS14200at 2988.147 kb on + strand, within AZOBR_RS14200at 2988.147 kb on + strand, within AZOBR_RS14200at 2988.147 kb on + strand, within AZOBR_RS14200at 2988.148 kb on - strand, within AZOBR_RS14200at 2988.198 kb on + strand, within AZOBR_RS14200at 2988.199 kb on - strand, within AZOBR_RS14200at 2988.199 kb on - strand, within AZOBR_RS14200at 2988.434 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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2,985,662 - AZOBR_RS14190 0.32 +0.1
2,985,853 + AZOBR_RS14190 0.52 -0.6
2,985,853 + AZOBR_RS14190 0.52 -0.3
2,985,854 - AZOBR_RS14190 0.52 -1.0
2,985,854 - AZOBR_RS14190 0.52 -1.2
2,985,913 + AZOBR_RS14190 0.58 -1.2
2,985,913 + AZOBR_RS14190 0.58 -1.5
2,985,914 - AZOBR_RS14190 0.59 -0.4
2,985,914 - AZOBR_RS14190 0.59 -0.1
2,985,914 - AZOBR_RS14190 0.59 -2.0
2,985,914 - AZOBR_RS14190 0.59 -0.1
2,985,928 + AZOBR_RS14190 0.60 +0.3
2,985,928 + AZOBR_RS14190 0.60 -0.2
2,985,928 + AZOBR_RS14190 0.60 -1.4
2,985,929 - AZOBR_RS14190 0.60 -0.4
2,985,946 + AZOBR_RS14190 0.62 -0.2
2,985,989 - AZOBR_RS14190 0.67 +0.3
2,986,060 + AZOBR_RS14190 0.74 +0.1
2,986,060 + AZOBR_RS14190 0.74 -0.4
2,986,189 + AZOBR_RS14190 0.88 -0.6
2,986,189 + AZOBR_RS14190 0.88 -0.1
2,986,190 - AZOBR_RS14190 0.88 -1.5
2,986,190 - AZOBR_RS14190 0.88 -2.4
2,986,387 + +0.2
2,986,387 + -0.5
2,986,393 - -0.6
2,986,393 - -2.4
2,987,394 + AZOBR_RS14195 0.80 -2.6
2,987,394 + AZOBR_RS14195 0.80 -0.6
2,987,394 + AZOBR_RS14195 0.80 +0.5
2,987,782 + -0.7
2,988,063 + AZOBR_RS14200 0.53 -0.6
2,988,147 + AZOBR_RS14200 0.73 +0.1
2,988,147 + AZOBR_RS14200 0.73 -1.7
2,988,147 + AZOBR_RS14200 0.73 -1.1
2,988,148 - AZOBR_RS14200 0.73 -1.0
2,988,198 + AZOBR_RS14200 0.85 -0.7
2,988,199 - AZOBR_RS14200 0.85 -1.2
2,988,199 - AZOBR_RS14200 0.85 +1.8
2,988,434 + -1.0

Or see this region's nucleotide sequence