Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13245

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13240 and AZOBR_RS13245 are separated by 61 nucleotidesAZOBR_RS13245 and AZOBR_RS13250 are separated by 15 nucleotides AZOBR_RS13240: AZOBR_RS13240 - sodium:proton antiporter, at 2,801,196 to 2,802,671 _RS13240 AZOBR_RS13245: AZOBR_RS13245 - carbamate kinase, at 2,802,733 to 2,803,686 _RS13245 AZOBR_RS13250: AZOBR_RS13250 - ornithine carbamoyltransferase, at 2,803,702 to 2,804,706 _RS13250 Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -2 -1 0 1at 2801.740 kb on + strand, within AZOBR_RS13240at 2801.740 kb on + strand, within AZOBR_RS13240at 2802.088 kb on + strand, within AZOBR_RS13240at 2802.088 kb on + strand, within AZOBR_RS13240at 2802.088 kb on + strand, within AZOBR_RS13240at 2802.088 kb on + strand, within AZOBR_RS13240at 2802.089 kb on - strand, within AZOBR_RS13240at 2802.089 kb on - strand, within AZOBR_RS13240at 2802.089 kb on - strand, within AZOBR_RS13240at 2802.089 kb on - strand, within AZOBR_RS13240at 2802.160 kb on + strand, within AZOBR_RS13240at 2802.160 kb on + strand, within AZOBR_RS13240at 2802.160 kb on + strand, within AZOBR_RS13240at 2802.314 kb on - strand, within AZOBR_RS13240at 2802.314 kb on - strand, within AZOBR_RS13240at 2802.319 kb on + strand, within AZOBR_RS13240at 2802.319 kb on + strand, within AZOBR_RS13240at 2802.320 kb on - strand, within AZOBR_RS13240at 2802.320 kb on - strand, within AZOBR_RS13240at 2802.346 kb on + strand, within AZOBR_RS13240at 2802.349 kb on + strand, within AZOBR_RS13240at 2802.349 kb on + strand, within AZOBR_RS13240at 2802.349 kb on + strand, within AZOBR_RS13240at 2802.350 kb on - strand, within AZOBR_RS13240at 2802.350 kb on - strand, within AZOBR_RS13240at 2802.350 kb on - strand, within AZOBR_RS13240at 2802.350 kb on - strand, within AZOBR_RS13240at 2802.350 kb on - strand, within AZOBR_RS13240at 2802.494 kb on - strand, within AZOBR_RS13240at 2802.494 kb on - strand, within AZOBR_RS13240at 2802.577 kb on + strandat 2802.578 kb on - strandat 2802.578 kb on - strandat 2802.578 kb on - strandat 2802.578 kb on - strandat 2802.578 kb on - strandat 2802.734 kb on + strandat 2802.905 kb on + strand, within AZOBR_RS13245at 2802.905 kb on + strand, within AZOBR_RS13245at 2802.905 kb on + strand, within AZOBR_RS13245at 2802.905 kb on + strand, within AZOBR_RS13245at 2802.906 kb on - strand, within AZOBR_RS13245at 2802.906 kb on - strand, within AZOBR_RS13245at 2802.906 kb on - strand, within AZOBR_RS13245at 2803.080 kb on + strand, within AZOBR_RS13245at 2803.080 kb on + strand, within AZOBR_RS13245at 2803.080 kb on + strand, within AZOBR_RS13245at 2803.080 kb on + strand, within AZOBR_RS13245at 2803.080 kb on + strand, within AZOBR_RS13245at 2803.081 kb on - strand, within AZOBR_RS13245at 2803.081 kb on - strand, within AZOBR_RS13245at 2803.081 kb on - strand, within AZOBR_RS13245at 2803.115 kb on + strand, within AZOBR_RS13245at 2803.115 kb on + strand, within AZOBR_RS13245at 2803.115 kb on + strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.116 kb on - strand, within AZOBR_RS13245at 2803.305 kb on - strand, within AZOBR_RS13245at 2803.433 kb on + strand, within AZOBR_RS13245at 2803.434 kb on - strand, within AZOBR_RS13245at 2803.946 kb on + strand, within AZOBR_RS13250at 2803.947 kb on - strand, within AZOBR_RS13250at 2803.947 kb on - strand, within AZOBR_RS13250at 2804.114 kb on + strand, within AZOBR_RS13250at 2804.114 kb on + strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.115 kb on - strand, within AZOBR_RS13250at 2804.155 kb on + strand, within AZOBR_RS13250at 2804.155 kb on + strand, within AZOBR_RS13250at 2804.155 kb on + strand, within AZOBR_RS13250at 2804.155 kb on + strand, within AZOBR_RS13250at 2804.156 kb on - strand, within AZOBR_RS13250at 2804.156 kb on - strand, within AZOBR_RS13250at 2804.156 kb on - strand, within AZOBR_RS13250at 2804.156 kb on - strand, within AZOBR_RS13250at 2804.225 kb on + strand, within AZOBR_RS13250at 2804.225 kb on + strand, within AZOBR_RS13250at 2804.225 kb on + strand, within AZOBR_RS13250at 2804.226 kb on - strand, within AZOBR_RS13250at 2804.226 kb on - strand, within AZOBR_RS13250at 2804.226 kb on - strand, within AZOBR_RS13250at 2804.226 kb on - strand, within AZOBR_RS13250at 2804.231 kb on + strand, within AZOBR_RS13250at 2804.231 kb on + strand, within AZOBR_RS13250at 2804.231 kb on + strand, within AZOBR_RS13250at 2804.231 kb on + strand, within AZOBR_RS13250at 2804.232 kb on - strand, within AZOBR_RS13250at 2804.232 kb on - strand, within AZOBR_RS13250at 2804.232 kb on - strand, within AZOBR_RS13250at 2804.232 kb on - strand, within AZOBR_RS13250at 2804.232 kb on - strand, within AZOBR_RS13250at 2804.306 kb on + strand, within AZOBR_RS13250at 2804.306 kb on + strand, within AZOBR_RS13250at 2804.327 kb on + strand, within AZOBR_RS13250at 2804.328 kb on - strand, within AZOBR_RS13250at 2804.328 kb on - strand, within AZOBR_RS13250at 2804.328 kb on - strand, within AZOBR_RS13250at 2804.335 kb on + strand, within AZOBR_RS13250at 2804.336 kb on - strand, within AZOBR_RS13250at 2804.345 kb on + strand, within AZOBR_RS13250at 2804.388 kb on - strand, within AZOBR_RS13250at 2804.402 kb on + strand, within AZOBR_RS13250at 2804.402 kb on + strand, within AZOBR_RS13250at 2804.403 kb on - strand, within AZOBR_RS13250at 2804.403 kb on - strand, within AZOBR_RS13250at 2804.403 kb on - strand, within AZOBR_RS13250at 2804.445 kb on + strand, within AZOBR_RS13250at 2804.445 kb on + strand, within AZOBR_RS13250at 2804.445 kb on + strand, within AZOBR_RS13250at 2804.445 kb on + strand, within AZOBR_RS13250at 2804.477 kb on + strand, within AZOBR_RS13250at 2804.477 kb on + strand, within AZOBR_RS13250at 2804.478 kb on - strand, within AZOBR_RS13250at 2804.478 kb on - strand, within AZOBR_RS13250at 2804.600 kb on + strand, within AZOBR_RS13250at 2804.639 kb on + strandat 2804.639 kb on + strandat 2804.639 kb on + strandat 2804.639 kb on + strandat 2804.640 kb on - strandat 2804.660 kb on + strandat 2804.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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2,801,740 + AZOBR_RS13240 0.37 -0.9
2,801,740 + AZOBR_RS13240 0.37 -1.1
2,802,088 + AZOBR_RS13240 0.60 -0.7
2,802,088 + AZOBR_RS13240 0.60 -0.0
2,802,088 + AZOBR_RS13240 0.60 +0.4
2,802,088 + AZOBR_RS13240 0.60 -0.2
2,802,089 - AZOBR_RS13240 0.61 +0.7
2,802,089 - AZOBR_RS13240 0.61 -0.4
2,802,089 - AZOBR_RS13240 0.61 +0.7
2,802,089 - AZOBR_RS13240 0.61 +0.1
2,802,160 + AZOBR_RS13240 0.65 +0.8
2,802,160 + AZOBR_RS13240 0.65 +0.4
2,802,160 + AZOBR_RS13240 0.65 +0.1
2,802,314 - AZOBR_RS13240 0.76 -0.3
2,802,314 - AZOBR_RS13240 0.76 -0.2
2,802,319 + AZOBR_RS13240 0.76 +0.4
2,802,319 + AZOBR_RS13240 0.76 +0.9
2,802,320 - AZOBR_RS13240 0.76 +0.3
2,802,320 - AZOBR_RS13240 0.76 +0.3
2,802,346 + AZOBR_RS13240 0.78 -0.7
2,802,349 + AZOBR_RS13240 0.78 +0.3
2,802,349 + AZOBR_RS13240 0.78 +0.2
2,802,349 + AZOBR_RS13240 0.78 -0.1
2,802,350 - AZOBR_RS13240 0.78 -1.1
2,802,350 - AZOBR_RS13240 0.78 -0.5
2,802,350 - AZOBR_RS13240 0.78 +0.1
2,802,350 - AZOBR_RS13240 0.78 +0.0
2,802,350 - AZOBR_RS13240 0.78 +0.7
2,802,494 - AZOBR_RS13240 0.88 -0.7
2,802,494 - AZOBR_RS13240 0.88 +0.0
2,802,577 + +0.4
2,802,578 - +0.6
2,802,578 - -1.1
2,802,578 - +0.3
2,802,578 - +0.3
2,802,578 - -0.6
2,802,734 + -1.2
2,802,905 + AZOBR_RS13245 0.18 -0.0
2,802,905 + AZOBR_RS13245 0.18 -0.1
2,802,905 + AZOBR_RS13245 0.18 -0.6
2,802,905 + AZOBR_RS13245 0.18 +0.5
2,802,906 - AZOBR_RS13245 0.18 +0.1
2,802,906 - AZOBR_RS13245 0.18 +0.2
2,802,906 - AZOBR_RS13245 0.18 -0.6
2,803,080 + AZOBR_RS13245 0.36 -0.6
2,803,080 + AZOBR_RS13245 0.36 -1.8
2,803,080 + AZOBR_RS13245 0.36 -0.5
2,803,080 + AZOBR_RS13245 0.36 -0.2
2,803,080 + AZOBR_RS13245 0.36 -1.4
2,803,081 - AZOBR_RS13245 0.36 -0.0
2,803,081 - AZOBR_RS13245 0.36 -0.9
2,803,081 - AZOBR_RS13245 0.36 +0.4
2,803,115 + AZOBR_RS13245 0.40 +0.0
2,803,115 + AZOBR_RS13245 0.40 -0.5
2,803,115 + AZOBR_RS13245 0.40 +0.3
2,803,116 - AZOBR_RS13245 0.40 -0.5
2,803,116 - AZOBR_RS13245 0.40 +0.1
2,803,116 - AZOBR_RS13245 0.40 +0.6
2,803,116 - AZOBR_RS13245 0.40 +0.4
2,803,116 - AZOBR_RS13245 0.40 +0.4
2,803,116 - AZOBR_RS13245 0.40 +0.4
2,803,116 - AZOBR_RS13245 0.40 -0.4
2,803,305 - AZOBR_RS13245 0.60 -0.1
2,803,433 + AZOBR_RS13245 0.73 -2.1
2,803,434 - AZOBR_RS13245 0.73 -0.1
2,803,946 + AZOBR_RS13250 0.24 +0.1
2,803,947 - AZOBR_RS13250 0.24 +0.5
2,803,947 - AZOBR_RS13250 0.24 +0.1
2,804,114 + AZOBR_RS13250 0.41 -0.0
2,804,114 + AZOBR_RS13250 0.41 -0.5
2,804,115 - AZOBR_RS13250 0.41 -1.4
2,804,115 - AZOBR_RS13250 0.41 -0.6
2,804,115 - AZOBR_RS13250 0.41 -0.8
2,804,115 - AZOBR_RS13250 0.41 +0.1
2,804,115 - AZOBR_RS13250 0.41 -1.6
2,804,115 - AZOBR_RS13250 0.41 +0.8
2,804,115 - AZOBR_RS13250 0.41 +0.3
2,804,115 - AZOBR_RS13250 0.41 -1.7
2,804,155 + AZOBR_RS13250 0.45 +1.0
2,804,155 + AZOBR_RS13250 0.45 +0.2
2,804,155 + AZOBR_RS13250 0.45 -0.7
2,804,155 + AZOBR_RS13250 0.45 -0.3
2,804,156 - AZOBR_RS13250 0.45 +0.0
2,804,156 - AZOBR_RS13250 0.45 +0.1
2,804,156 - AZOBR_RS13250 0.45 +0.0
2,804,156 - AZOBR_RS13250 0.45 +0.2
2,804,225 + AZOBR_RS13250 0.52 +0.2
2,804,225 + AZOBR_RS13250 0.52 +0.1
2,804,225 + AZOBR_RS13250 0.52 -0.2
2,804,226 - AZOBR_RS13250 0.52 -0.3
2,804,226 - AZOBR_RS13250 0.52 -1.1
2,804,226 - AZOBR_RS13250 0.52 +0.7
2,804,226 - AZOBR_RS13250 0.52 +0.2
2,804,231 + AZOBR_RS13250 0.53 +0.2
2,804,231 + AZOBR_RS13250 0.53 +0.2
2,804,231 + AZOBR_RS13250 0.53 -0.1
2,804,231 + AZOBR_RS13250 0.53 -0.1
2,804,232 - AZOBR_RS13250 0.53 +0.3
2,804,232 - AZOBR_RS13250 0.53 -0.3
2,804,232 - AZOBR_RS13250 0.53 -0.1
2,804,232 - AZOBR_RS13250 0.53 -0.4
2,804,232 - AZOBR_RS13250 0.53 -0.2
2,804,306 + AZOBR_RS13250 0.60 +0.4
2,804,306 + AZOBR_RS13250 0.60 -0.9
2,804,327 + AZOBR_RS13250 0.62 -0.9
2,804,328 - AZOBR_RS13250 0.62 -0.7
2,804,328 - AZOBR_RS13250 0.62 +0.0
2,804,328 - AZOBR_RS13250 0.62 -0.5
2,804,335 + AZOBR_RS13250 0.63 -0.6
2,804,336 - AZOBR_RS13250 0.63 -0.6
2,804,345 + AZOBR_RS13250 0.64 +0.8
2,804,388 - AZOBR_RS13250 0.68 -0.5
2,804,402 + AZOBR_RS13250 0.70 -1.0
2,804,402 + AZOBR_RS13250 0.70 +0.1
2,804,403 - AZOBR_RS13250 0.70 -0.4
2,804,403 - AZOBR_RS13250 0.70 -0.1
2,804,403 - AZOBR_RS13250 0.70 +0.4
2,804,445 + AZOBR_RS13250 0.74 -1.9
2,804,445 + AZOBR_RS13250 0.74 -0.6
2,804,445 + AZOBR_RS13250 0.74 -0.3
2,804,445 + AZOBR_RS13250 0.74 +0.4
2,804,477 + AZOBR_RS13250 0.77 -0.9
2,804,477 + AZOBR_RS13250 0.77 -0.8
2,804,478 - AZOBR_RS13250 0.77 +0.2
2,804,478 - AZOBR_RS13250 0.77 -1.1
2,804,600 + AZOBR_RS13250 0.89 -0.4
2,804,639 + +0.9
2,804,639 + +0.3
2,804,639 + -0.1
2,804,639 + -0.1
2,804,640 - +0.3
2,804,660 + +0.5
2,804,661 - -0.6

Or see this region's nucleotide sequence