Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11060

Experiment: LB; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11050 and AZOBR_RS11055 are separated by 67 nucleotidesAZOBR_RS11055 and AZOBR_RS11060 are separated by 108 nucleotidesAZOBR_RS11060 and AZOBR_RS11065 are separated by 43 nucleotides AZOBR_RS11050: AZOBR_RS11050 - von Willebrand factor A, at 2,324,571 to 2,325,764 _RS11050 AZOBR_RS11055: AZOBR_RS11055 - phosphohydrolase, at 2,325,832 to 2,326,383 _RS11055 AZOBR_RS11060: AZOBR_RS11060 - (Fe-S)-binding protein, at 2,326,492 to 2,327,958 _RS11060 AZOBR_RS11065: AZOBR_RS11065 - permease, at 2,328,002 to 2,328,499 _RS11065 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -2 -1 0 1at 2325.640 kb on + strand, within AZOBR_RS11050at 2325.643 kb on + strand, within AZOBR_RS11050at 2325.643 kb on + strand, within AZOBR_RS11050at 2325.643 kb on + strand, within AZOBR_RS11050at 2325.644 kb on - strand, within AZOBR_RS11050at 2325.644 kb on - strand, within AZOBR_RS11050at 2325.644 kb on - strand, within AZOBR_RS11050at 2325.644 kb on - strand, within AZOBR_RS11050at 2325.704 kb on - strandat 2325.808 kb on + strandat 2325.809 kb on - strandat 2325.922 kb on + strand, within AZOBR_RS11055at 2325.923 kb on - strand, within AZOBR_RS11055at 2326.039 kb on + strand, within AZOBR_RS11055at 2326.040 kb on - strand, within AZOBR_RS11055at 2326.040 kb on - strand, within AZOBR_RS11055at 2326.040 kb on - strand, within AZOBR_RS11055at 2326.342 kb on + strandat 2326.343 kb on - strandat 2326.343 kb on - strandat 2326.343 kb on - strandat 2326.343 kb on - strandat 2326.381 kb on + strandat 2326.427 kb on - strandat 2326.443 kb on - strandat 2326.456 kb on + strandat 2326.456 kb on + strandat 2326.457 kb on - strandat 2326.573 kb on + strandat 2326.574 kb on - strandat 2326.642 kb on + strand, within AZOBR_RS11060at 2326.642 kb on + strand, within AZOBR_RS11060at 2326.642 kb on + strand, within AZOBR_RS11060at 2326.643 kb on - strand, within AZOBR_RS11060at 2326.643 kb on - strand, within AZOBR_RS11060at 2326.645 kb on + strand, within AZOBR_RS11060at 2326.645 kb on + strand, within AZOBR_RS11060at 2326.765 kb on + strand, within AZOBR_RS11060at 2326.766 kb on - strand, within AZOBR_RS11060at 2326.768 kb on + strand, within AZOBR_RS11060at 2326.768 kb on + strand, within AZOBR_RS11060at 2326.768 kb on + strand, within AZOBR_RS11060at 2326.769 kb on - strand, within AZOBR_RS11060at 2326.769 kb on - strand, within AZOBR_RS11060at 2327.032 kb on + strand, within AZOBR_RS11060at 2327.128 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.167 kb on + strand, within AZOBR_RS11060at 2327.168 kb on - strand, within AZOBR_RS11060at 2327.168 kb on - strand, within AZOBR_RS11060at 2327.168 kb on - strand, within AZOBR_RS11060at 2327.168 kb on - strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strand, within AZOBR_RS11060at 2327.218 kb on + strandat 2327.219 kb on - strand, within AZOBR_RS11060at 2327.231 kb on - strand, within AZOBR_RS11060at 2327.545 kb on + strand, within AZOBR_RS11060at 2327.545 kb on + strand, within AZOBR_RS11060at 2327.546 kb on - strand, within AZOBR_RS11060at 2327.546 kb on - strand, within AZOBR_RS11060at 2327.680 kb on + strand, within AZOBR_RS11060at 2327.681 kb on - strand, within AZOBR_RS11060at 2327.681 kb on - strand, within AZOBR_RS11060at 2327.681 kb on - strand, within AZOBR_RS11060at 2327.722 kb on + strand, within AZOBR_RS11060at 2327.723 kb on - strand, within AZOBR_RS11060at 2327.723 kb on - strand, within AZOBR_RS11060at 2327.833 kb on + strandat 2327.834 kb on - strandat 2327.834 kb on - strandat 2328.099 kb on - strand, within AZOBR_RS11065at 2328.210 kb on + strand, within AZOBR_RS11065at 2328.211 kb on - strand, within AZOBR_RS11065at 2328.312 kb on + strand, within AZOBR_RS11065at 2328.313 kb on - strand, within AZOBR_RS11065at 2328.378 kb on + strand, within AZOBR_RS11065at 2328.388 kb on - strand, within AZOBR_RS11065at 2328.388 kb on - strand, within AZOBR_RS11065at 2328.388 kb on - strand, within AZOBR_RS11065at 2328.483 kb on + strandat 2328.483 kb on + strandat 2328.483 kb on + strandat 2328.483 kb on + strandat 2328.484 kb on - strandat 2328.484 kb on - strandat 2328.484 kb on - strandat 2328.484 kb on - strandat 2328.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic
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2,325,640 + AZOBR_RS11050 0.90 +0.6
2,325,643 + AZOBR_RS11050 0.90 +0.4
2,325,643 + AZOBR_RS11050 0.90 -0.9
2,325,643 + AZOBR_RS11050 0.90 +0.3
2,325,644 - AZOBR_RS11050 0.90 +0.5
2,325,644 - AZOBR_RS11050 0.90 -0.7
2,325,644 - AZOBR_RS11050 0.90 -0.3
2,325,644 - AZOBR_RS11050 0.90 -0.2
2,325,704 - -0.1
2,325,808 + +0.0
2,325,809 - -0.4
2,325,922 + AZOBR_RS11055 0.16 +0.4
2,325,923 - AZOBR_RS11055 0.16 -0.1
2,326,039 + AZOBR_RS11055 0.38 -0.4
2,326,040 - AZOBR_RS11055 0.38 +0.4
2,326,040 - AZOBR_RS11055 0.38 +1.0
2,326,040 - AZOBR_RS11055 0.38 +0.0
2,326,342 + -0.5
2,326,343 - -0.1
2,326,343 - -0.4
2,326,343 - -0.4
2,326,343 - +0.5
2,326,381 + -0.2
2,326,427 - +0.0
2,326,443 - +0.8
2,326,456 + -0.0
2,326,456 + +0.6
2,326,457 - -0.1
2,326,573 + +0.3
2,326,574 - +0.3
2,326,642 + AZOBR_RS11060 0.10 +0.4
2,326,642 + AZOBR_RS11060 0.10 -0.5
2,326,642 + AZOBR_RS11060 0.10 +0.6
2,326,643 - AZOBR_RS11060 0.10 +0.4
2,326,643 - AZOBR_RS11060 0.10 +0.3
2,326,645 + AZOBR_RS11060 0.10 -0.6
2,326,645 + AZOBR_RS11060 0.10 +0.0
2,326,765 + AZOBR_RS11060 0.19 +0.3
2,326,766 - AZOBR_RS11060 0.19 -2.0
2,326,768 + AZOBR_RS11060 0.19 +1.0
2,326,768 + AZOBR_RS11060 0.19 -0.1
2,326,768 + AZOBR_RS11060 0.19 +0.1
2,326,769 - AZOBR_RS11060 0.19 +0.0
2,326,769 - AZOBR_RS11060 0.19 -0.1
2,327,032 + AZOBR_RS11060 0.37 +0.7
2,327,128 + AZOBR_RS11060 0.43 -0.4
2,327,167 + AZOBR_RS11060 0.46 -0.2
2,327,167 + AZOBR_RS11060 0.46 +0.6
2,327,167 + AZOBR_RS11060 0.46 -0.7
2,327,167 + AZOBR_RS11060 0.46 +0.3
2,327,167 + AZOBR_RS11060 0.46 +0.3
2,327,167 + AZOBR_RS11060 0.46 +0.3
2,327,168 - AZOBR_RS11060 0.46 +0.6
2,327,168 - AZOBR_RS11060 0.46 -0.4
2,327,168 - AZOBR_RS11060 0.46 +0.2
2,327,168 - AZOBR_RS11060 0.46 -0.2
2,327,218 + AZOBR_RS11060 0.49 -0.5
2,327,218 + AZOBR_RS11060 0.49 +0.2
2,327,218 + AZOBR_RS11060 0.49 +0.5
2,327,218 + AZOBR_RS11060 0.49 -0.4
2,327,218 + AZOBR_RS11060 0.49 +0.8
2,327,218 + AZOBR_RS11060 0.49 -0.2
2,327,218 + +0.8
2,327,219 - AZOBR_RS11060 0.50 +0.8
2,327,231 - AZOBR_RS11060 0.50 +0.2
2,327,545 + AZOBR_RS11060 0.72 +1.2
2,327,545 + AZOBR_RS11060 0.72 -0.3
2,327,546 - AZOBR_RS11060 0.72 -0.1
2,327,546 - AZOBR_RS11060 0.72 +0.7
2,327,680 + AZOBR_RS11060 0.81 +1.2
2,327,681 - AZOBR_RS11060 0.81 +0.0
2,327,681 - AZOBR_RS11060 0.81 +0.1
2,327,681 - AZOBR_RS11060 0.81 -0.0
2,327,722 + AZOBR_RS11060 0.84 +1.3
2,327,723 - AZOBR_RS11060 0.84 +0.1
2,327,723 - AZOBR_RS11060 0.84 +1.7
2,327,833 + +0.9
2,327,834 - +0.9
2,327,834 - +0.3
2,328,099 - AZOBR_RS11065 0.19 +0.1
2,328,210 + AZOBR_RS11065 0.42 +0.1
2,328,211 - AZOBR_RS11065 0.42 +0.6
2,328,312 + AZOBR_RS11065 0.62 -0.2
2,328,313 - AZOBR_RS11065 0.62 -2.3
2,328,378 + AZOBR_RS11065 0.76 +0.7
2,328,388 - AZOBR_RS11065 0.78 -0.2
2,328,388 - AZOBR_RS11065 0.78 +0.1
2,328,388 - AZOBR_RS11065 0.78 -1.0
2,328,483 + -1.0
2,328,483 + +0.4
2,328,483 + +0.5
2,328,483 + -0.1
2,328,484 - +0.5
2,328,484 - -0.4
2,328,484 - -0.5
2,328,484 - +1.5
2,328,659 - +0.3

Or see this region's nucleotide sequence