Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04060 and AZOBR_RS04065 are separated by 42 nucleotides AZOBR_RS04065 and AZOBR_RS04070 are separated by 95 nucleotides AZOBR_RS04070 and AZOBR_RS04075 are separated by 117 nucleotides
AZOBR_RS04060: AZOBR_RS04060 - 50S rRNA methyltransferase, at 855,743 to 856,201
_RS04060
AZOBR_RS04065: AZOBR_RS04065 - ribosome-associated protein IOJAP, at 856,244 to 856,585
_RS04065
AZOBR_RS04070: AZOBR_RS04070 - nicotinic acid mononucleotide adenylyltransferase, at 856,681 to 857,298
_RS04070
AZOBR_RS04075: AZOBR_RS04075 - gamma-glutamyl phosphate reductase, at 857,416 to 858,696
_RS04075
Position (kb) 856
857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 855.823 kb on + strand, within AZOBR_RS04060 at 855.824 kb on - strand, within AZOBR_RS04060 at 856.135 kb on - strand, within AZOBR_RS04060 at 856.144 kb on - strand, within AZOBR_RS04060 at 856.308 kb on + strand, within AZOBR_RS04065 at 856.309 kb on - strand, within AZOBR_RS04065 at 856.664 kb on + strand at 856.664 kb on + strand at 856.664 kb on + strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.396 kb on - strand at 857.396 kb on - strand at 857.396 kb on - strand at 857.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 855,823 + AZOBR_RS04060 0.17 +0.7 855,824 - AZOBR_RS04060 0.18 +0.2 856,135 - AZOBR_RS04060 0.85 +0.8 856,144 - AZOBR_RS04060 0.87 +0.2 856,308 + AZOBR_RS04065 0.19 -1.4 856,309 - AZOBR_RS04065 0.19 -0.0 856,664 + -0.2 856,664 + -0.8 856,664 + -1.8 857,314 - +0.4 857,314 - -0.3 857,396 - +0.1 857,396 - +0.8 857,396 - +0.3 857,411 - +0.6
Or see this region's nucleotide sequence