Experiment: LB; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01845 and AZOBR_RS01850 are separated by 112 nucleotides AZOBR_RS01850 and AZOBR_RS01855 are separated by 343 nucleotides AZOBR_RS01855 and AZOBR_RS01860 are separated by 403 nucleotides
AZOBR_RS01845: AZOBR_RS01845 - leucyl-tRNA synthetase, at 374,996 to 377,566
_RS01845
AZOBR_RS01850: AZOBR_RS01850 - hypothetical protein, at 377,679 to 378,218
_RS01850
AZOBR_RS01855: AZOBR_RS01855 - major outer membrane protein OmaA, at 378,562 to 379,734
_RS01855
AZOBR_RS01860: AZOBR_RS01860 - hypothetical protein, at 380,138 to 381,295
_RS01860
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 377.602 kb on - strand at 377.610 kb on - strand at 377.858 kb on - strand, within AZOBR_RS01850 at 377.903 kb on - strand, within AZOBR_RS01850 at 378.290 kb on - strand at 379.855 kb on - strand at 380.121 kb on - strand at 380.258 kb on + strand, within AZOBR_RS01860 at 380.258 kb on + strand, within AZOBR_RS01860 at 380.259 kb on - strand, within AZOBR_RS01860 at 380.360 kb on + strand, within AZOBR_RS01860 at 380.583 kb on - strand, within AZOBR_RS01860 at 380.654 kb on + strand, within AZOBR_RS01860 at 380.655 kb on - strand at 380.655 kb on - strand, within AZOBR_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic remove 377,602 - +0.2 377,610 - +0.8 377,858 - AZOBR_RS01850 0.33 -1.0 377,903 - AZOBR_RS01850 0.41 -2.8 378,290 - -1.3 379,855 - -0.6 380,121 - -0.3 380,258 + AZOBR_RS01860 0.10 -0.1 380,258 + AZOBR_RS01860 0.10 -0.1 380,259 - AZOBR_RS01860 0.10 -0.0 380,360 + AZOBR_RS01860 0.19 -0.1 380,583 - AZOBR_RS01860 0.38 +0.4 380,654 + AZOBR_RS01860 0.45 -1.9 380,655 - -2.7 380,655 - AZOBR_RS01860 0.45 +0.2
Or see this region's nucleotide sequence