Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26540

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26530 and AO353_26535 overlap by 33 nucleotidesAO353_26535 and AO353_26540 are separated by 6 nucleotidesAO353_26540 and AO353_26545 are separated by 220 nucleotidesAO353_26545 and AO353_26550 are separated by 2 nucleotides AO353_26530: AO353_26530 - hypothetical protein, at 5,809,679 to 5,810,458 _26530 AO353_26535: AO353_26535 - NADH pyrophosphatase, at 5,810,426 to 5,811,256 _26535 AO353_26540: AO353_26540 - enoyl-CoA hydratase, at 5,811,263 to 5,812,075 _26540 AO353_26545: AO353_26545 - YeeE/YedE, at 5,812,296 to 5,812,730 _26545 AO353_26550: AO353_26550 - hypothetical protein, at 5,812,733 to 5,813,146 _26550 Position (kb) 5811 5812 5813Strain fitness (log2 ratio) -2 -1 0 1 2at 5810.391 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.456 kb on + strandat 5810.457 kb on - strandat 5810.457 kb on - strandat 5810.457 kb on - strandat 5810.457 kb on - strandat 5810.457 kb on - strandat 5810.472 kb on + strandat 5810.472 kb on + strandat 5810.472 kb on + strandat 5810.472 kb on + strandat 5810.472 kb on + strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.473 kb on - strandat 5810.488 kb on - strandat 5810.593 kb on - strand, within AO353_26535at 5810.652 kb on + strand, within AO353_26535at 5810.652 kb on + strand, within AO353_26535at 5810.653 kb on - strand, within AO353_26535at 5810.653 kb on - strand, within AO353_26535at 5810.701 kb on + strand, within AO353_26535at 5810.755 kb on - strand, within AO353_26535at 5810.871 kb on + strand, within AO353_26535at 5810.871 kb on + strand, within AO353_26535at 5810.871 kb on + strand, within AO353_26535at 5810.872 kb on - strand, within AO353_26535at 5810.872 kb on - strand, within AO353_26535at 5810.872 kb on - strand, within AO353_26535at 5810.872 kb on - strand, within AO353_26535at 5810.965 kb on - strand, within AO353_26535at 5810.978 kb on - strand, within AO353_26535at 5810.978 kb on - strand, within AO353_26535at 5810.978 kb on - strand, within AO353_26535at 5810.979 kb on + strand, within AO353_26535at 5810.979 kb on + strand, within AO353_26535at 5810.979 kb on + strand, within AO353_26535at 5810.979 kb on + strand, within AO353_26535at 5810.979 kb on + strandat 5810.979 kb on + strand, within AO353_26535at 5810.980 kb on - strand, within AO353_26535at 5810.980 kb on - strand, within AO353_26535at 5810.980 kb on - strandat 5811.029 kb on - strand, within AO353_26535at 5811.069 kb on + strand, within AO353_26535at 5811.069 kb on + strand, within AO353_26535at 5811.069 kb on + strandat 5811.069 kb on + strand, within AO353_26535at 5811.069 kb on + strand, within AO353_26535at 5811.070 kb on - strand, within AO353_26535at 5811.352 kb on + strand, within AO353_26540at 5811.360 kb on + strand, within AO353_26540at 5811.360 kb on + strand, within AO353_26540at 5811.360 kb on + strand, within AO353_26540at 5811.360 kb on + strand, within AO353_26540at 5811.360 kb on + strand, within AO353_26540at 5811.361 kb on - strand, within AO353_26540at 5811.361 kb on - strand, within AO353_26540at 5811.396 kb on + strand, within AO353_26540at 5811.396 kb on + strand, within AO353_26540at 5811.396 kb on + strand, within AO353_26540at 5811.396 kb on + strand, within AO353_26540at 5811.396 kb on + strand, within AO353_26540at 5811.397 kb on - strand, within AO353_26540at 5811.397 kb on - strand, within AO353_26540at 5811.397 kb on - strand, within AO353_26540at 5811.397 kb on - strand, within AO353_26540at 5811.397 kb on - strand, within AO353_26540at 5811.558 kb on + strand, within AO353_26540at 5811.558 kb on + strand, within AO353_26540at 5811.558 kb on + strand, within AO353_26540at 5811.558 kb on + strand, within AO353_26540at 5811.558 kb on + strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.559 kb on - strand, within AO353_26540at 5811.763 kb on + strand, within AO353_26540at 5811.763 kb on + strand, within AO353_26540at 5811.764 kb on - strand, within AO353_26540at 5811.764 kb on - strand, within AO353_26540at 5811.803 kb on - strand, within AO353_26540at 5811.918 kb on - strand, within AO353_26540at 5812.066 kb on - strandat 5812.103 kb on + strandat 5812.115 kb on + strandat 5812.115 kb on + strandat 5812.115 kb on + strandat 5812.116 kb on - strandat 5812.116 kb on - strandat 5812.116 kb on - strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.117 kb on + strandat 5812.118 kb on - strandat 5812.140 kb on + strandat 5812.140 kb on + strandat 5812.196 kb on - strandat 5812.196 kb on - strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.238 kb on + strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.239 kb on - strandat 5812.249 kb on + strandat 5812.250 kb on - strandat 5812.250 kb on - strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.262 kb on + strandat 5812.263 kb on - strandat 5812.263 kb on - strandat 5812.263 kb on - strandat 5812.625 kb on - strand, within AO353_26545at 5812.691 kb on + strandat 5812.692 kb on - strandat 5812.785 kb on + strand, within AO353_26550at 5812.786 kb on - strand, within AO353_26550at 5813.029 kb on + strand, within AO353_26550at 5813.030 kb on - strand, within AO353_26550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,810,391 + -0.7
5,810,456 + -0.1
5,810,456 + -0.8
5,810,456 + +0.6
5,810,456 + +1.4
5,810,456 + +0.9
5,810,456 + -1.4
5,810,456 + +0.3
5,810,457 - -0.0
5,810,457 - -0.4
5,810,457 - -1.9
5,810,457 - -0.9
5,810,457 - +0.6
5,810,472 + +0.9
5,810,472 + -0.4
5,810,472 + +0.4
5,810,472 + +0.0
5,810,472 + +0.3
5,810,473 - -1.5
5,810,473 - -0.3
5,810,473 - +0.1
5,810,473 - -0.1
5,810,473 - +1.9
5,810,473 - -1.5
5,810,473 - +0.4
5,810,488 - -1.1
5,810,593 - AO353_26535 0.20 +0.6
5,810,652 + AO353_26535 0.27 +0.0
5,810,652 + AO353_26535 0.27 +0.4
5,810,653 - AO353_26535 0.27 -0.4
5,810,653 - AO353_26535 0.27 +1.8
5,810,701 + AO353_26535 0.33 -0.2
5,810,755 - AO353_26535 0.40 -1.1
5,810,871 + AO353_26535 0.54 -0.9
5,810,871 + AO353_26535 0.54 -0.6
5,810,871 + AO353_26535 0.54 -0.7
5,810,872 - AO353_26535 0.54 -0.1
5,810,872 - AO353_26535 0.54 -0.4
5,810,872 - AO353_26535 0.54 +2.4
5,810,872 - AO353_26535 0.54 -0.1
5,810,965 - AO353_26535 0.65 -1.2
5,810,978 - AO353_26535 0.66 -1.7
5,810,978 - AO353_26535 0.66 -2.1
5,810,978 - AO353_26535 0.66 +0.6
5,810,979 + AO353_26535 0.67 +0.3
5,810,979 + AO353_26535 0.67 +0.4
5,810,979 + AO353_26535 0.67 -0.1
5,810,979 + AO353_26535 0.67 +0.6
5,810,979 + +0.9
5,810,979 + AO353_26535 0.67 -0.6
5,810,980 - AO353_26535 0.67 -0.1
5,810,980 - AO353_26535 0.67 -1.4
5,810,980 - -0.9
5,811,029 - AO353_26535 0.73 +1.9
5,811,069 + AO353_26535 0.77 -1.0
5,811,069 + AO353_26535 0.77 -0.1
5,811,069 + -0.0
5,811,069 + AO353_26535 0.77 -0.8
5,811,069 + AO353_26535 0.77 -0.6
5,811,070 - AO353_26535 0.77 -0.8
5,811,352 + AO353_26540 0.11 +0.7
5,811,360 + AO353_26540 0.12 -0.4
5,811,360 + AO353_26540 0.12 +0.6
5,811,360 + AO353_26540 0.12 -0.5
5,811,360 + AO353_26540 0.12 +0.3
5,811,360 + AO353_26540 0.12 -0.3
5,811,361 - AO353_26540 0.12 -0.5
5,811,361 - AO353_26540 0.12 -1.3
5,811,396 + AO353_26540 0.16 -1.8
5,811,396 + AO353_26540 0.16 -0.4
5,811,396 + AO353_26540 0.16 -1.6
5,811,396 + AO353_26540 0.16 +0.4
5,811,396 + AO353_26540 0.16 -1.6
5,811,397 - AO353_26540 0.16 +0.8
5,811,397 - AO353_26540 0.16 -0.5
5,811,397 - AO353_26540 0.16 -0.6
5,811,397 - AO353_26540 0.16 -0.6
5,811,397 - AO353_26540 0.16 -1.9
5,811,558 + AO353_26540 0.36 +0.4
5,811,558 + AO353_26540 0.36 -1.9
5,811,558 + AO353_26540 0.36 +0.1
5,811,558 + AO353_26540 0.36 +0.1
5,811,558 + AO353_26540 0.36 +0.0
5,811,559 - AO353_26540 0.36 -0.1
5,811,559 - AO353_26540 0.36 +0.5
5,811,559 - AO353_26540 0.36 +0.4
5,811,559 - AO353_26540 0.36 -1.3
5,811,559 - AO353_26540 0.36 -0.5
5,811,559 - AO353_26540 0.36 -0.4
5,811,559 - AO353_26540 0.36 +0.5
5,811,763 + AO353_26540 0.62 +0.4
5,811,763 + AO353_26540 0.62 -0.7
5,811,764 - AO353_26540 0.62 -0.6
5,811,764 - AO353_26540 0.62 -2.3
5,811,803 - AO353_26540 0.66 -1.4
5,811,918 - AO353_26540 0.81 +0.1
5,812,066 - -0.6
5,812,103 + -0.1
5,812,115 + +0.9
5,812,115 + -0.0
5,812,115 + -0.0
5,812,116 - +0.3
5,812,116 - -1.0
5,812,116 - -0.2
5,812,117 + -0.6
5,812,117 + +0.1
5,812,117 + +0.4
5,812,117 + -0.2
5,812,118 - +0.2
5,812,140 + -0.5
5,812,140 + -0.6
5,812,196 - +0.1
5,812,196 - -2.0
5,812,238 + +0.9
5,812,238 + +0.4
5,812,238 + +0.4
5,812,238 + +0.7
5,812,238 + -1.5
5,812,238 + -0.6
5,812,238 + -0.5
5,812,238 + -0.6
5,812,239 - +0.1
5,812,239 - -0.5
5,812,239 - -0.6
5,812,239 - -0.5
5,812,239 - -0.3
5,812,239 - -1.6
5,812,249 + -0.0
5,812,250 - -1.6
5,812,250 - -0.9
5,812,262 + -0.1
5,812,262 + +0.1
5,812,262 + +0.6
5,812,262 + +0.4
5,812,262 + -0.9
5,812,263 - +0.1
5,812,263 - -0.6
5,812,263 - -0.9
5,812,625 - AO353_26545 0.76 -0.2
5,812,691 + -1.6
5,812,692 - -0.9
5,812,785 + AO353_26550 0.13 +0.2
5,812,786 - AO353_26550 0.13 -0.3
5,813,029 + AO353_26550 0.71 -0.6
5,813,030 - AO353_26550 0.72 -0.2

Or see this region's nucleotide sequence