Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23560

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23555 and AO353_23560 are separated by 334 nucleotidesAO353_23560 and AO353_23565 are separated by 14 nucleotidesAO353_23565 and AO353_23570 overlap by 35 nucleotides AO353_23555: AO353_23555 - DNA polymerase III subunit epsilon, at 5,158,125 to 5,158,883 _23555 AO353_23560: AO353_23560 - lysine decarboxylase, at 5,159,218 to 5,161,473 _23560 AO353_23565: AO353_23565 - GNAT family acetyltransferase, at 5,161,488 to 5,162,102 _23565 AO353_23570: AO353_23570 - LysR family transcriptional regulator, at 5,162,068 to 5,162,961 _23570 Position (kb) 5159 5160 5161 5162Strain fitness (log2 ratio) -2 -1 0 1 2at 5158.881 kb on + strandat 5158.881 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.046 kb on + strandat 5159.166 kb on - strandat 5159.176 kb on + strandat 5159.176 kb on + strandat 5159.187 kb on + strandat 5159.188 kb on - strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.221 kb on + strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.222 kb on - strandat 5159.223 kb on + strandat 5159.223 kb on + strandat 5159.224 kb on - strandat 5159.246 kb on + strandat 5159.246 kb on + strandat 5159.246 kb on + strandat 5159.247 kb on - strandat 5159.247 kb on - strandat 5159.353 kb on + strandat 5159.353 kb on + strandat 5159.353 kb on + strandat 5159.444 kb on + strand, within AO353_23560at 5159.584 kb on + strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.585 kb on - strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.707 kb on + strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.708 kb on - strand, within AO353_23560at 5159.746 kb on + strand, within AO353_23560at 5159.763 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5159.797 kb on - strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.055 kb on + strand, within AO353_23560at 5160.056 kb on - strand, within AO353_23560at 5160.056 kb on - strand, within AO353_23560at 5160.056 kb on - strand, within AO353_23560at 5160.056 kb on - strand, within AO353_23560at 5160.056 kb on - strand, within AO353_23560at 5160.208 kb on + strand, within AO353_23560at 5160.209 kb on - strand, within AO353_23560at 5160.209 kb on - strand, within AO353_23560at 5160.223 kb on + strand, within AO353_23560at 5160.224 kb on - strand, within AO353_23560at 5160.224 kb on - strand, within AO353_23560at 5160.224 kb on - strand, within AO353_23560at 5160.292 kb on + strand, within AO353_23560at 5160.293 kb on - strand, within AO353_23560at 5160.298 kb on + strand, within AO353_23560at 5160.299 kb on - strand, within AO353_23560at 5160.515 kb on - strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.698 kb on + strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strand, within AO353_23560at 5160.699 kb on - strandat 5160.699 kb on - strand, within AO353_23560at 5160.775 kb on + strand, within AO353_23560at 5160.775 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.919 kb on + strand, within AO353_23560at 5160.920 kb on - strand, within AO353_23560at 5160.952 kb on - strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5160.960 kb on + strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.007 kb on - strand, within AO353_23560at 5161.146 kb on + strand, within AO353_23560at 5161.146 kb on + strand, within AO353_23560at 5161.147 kb on - strand, within AO353_23560at 5161.156 kb on + strand, within AO353_23560at 5161.156 kb on + strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.157 kb on - strand, within AO353_23560at 5161.351 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.447 kb on + strandat 5161.448 kb on - strandat 5161.448 kb on - strandat 5161.487 kb on + strandat 5161.488 kb on - strandat 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.557 kb on + strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.558 kb on - strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.559 kb on + strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.560 kb on - strand, within AO353_23565at 5161.775 kb on + strand, within AO353_23565at 5161.919 kb on + strand, within AO353_23565at 5161.920 kb on - strand, within AO353_23565at 5161.944 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5161.959 kb on + strand, within AO353_23565at 5162.103 kb on + strandat 5162.104 kb on - strandat 5162.162 kb on + strand, within AO353_23570at 5162.233 kb on - strand, within AO353_23570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,158,881 + +0.1
5,158,881 + -0.8
5,159,046 + +0.2
5,159,046 + -1.4
5,159,046 + -0.6
5,159,046 + -0.6
5,159,046 + -0.3
5,159,046 + -1.1
5,159,046 + -0.2
5,159,046 + +0.6
5,159,046 + +0.8
5,159,046 + -0.7
5,159,046 + -1.5
5,159,166 - -0.6
5,159,176 + -1.2
5,159,176 + -0.5
5,159,187 + -0.2
5,159,188 - +0.7
5,159,221 + +1.4
5,159,221 + +0.4
5,159,221 + +0.2
5,159,221 + -0.1
5,159,221 + -0.3
5,159,221 + +0.0
5,159,221 + -1.6
5,159,221 + -2.2
5,159,221 + -0.5
5,159,222 - +0.1
5,159,222 - -0.7
5,159,222 - -0.6
5,159,222 - +0.4
5,159,222 - -1.0
5,159,222 - +1.3
5,159,222 - +1.0
5,159,222 - +0.1
5,159,222 - -1.6
5,159,223 + -1.6
5,159,223 + -1.8
5,159,224 - +1.7
5,159,246 + -1.1
5,159,246 + -0.2
5,159,246 + +0.6
5,159,247 - -0.8
5,159,247 - -0.7
5,159,353 + -1.4
5,159,353 + +0.1
5,159,353 + -0.3
5,159,444 + AO353_23560 0.10 -0.1
5,159,584 + AO353_23560 0.16 -0.8
5,159,585 - AO353_23560 0.16 -0.5
5,159,585 - AO353_23560 0.16 -1.0
5,159,585 - AO353_23560 0.16 -0.4
5,159,585 - AO353_23560 0.16 +1.2
5,159,585 - AO353_23560 0.16 +0.5
5,159,585 - AO353_23560 0.16 -0.8
5,159,585 - AO353_23560 0.16 +1.9
5,159,707 + AO353_23560 0.22 +0.8
5,159,707 + AO353_23560 0.22 +0.0
5,159,707 + AO353_23560 0.22 +0.4
5,159,708 - AO353_23560 0.22 -0.7
5,159,708 - AO353_23560 0.22 +0.1
5,159,708 - AO353_23560 0.22 +0.6
5,159,708 - AO353_23560 0.22 +0.4
5,159,708 - AO353_23560 0.22 -1.8
5,159,708 - AO353_23560 0.22 -1.4
5,159,746 + AO353_23560 0.23 -0.5
5,159,763 - AO353_23560 0.24 -0.2
5,159,797 - AO353_23560 0.26 -0.0
5,159,797 - AO353_23560 0.26 -1.3
5,159,797 - AO353_23560 0.26 +1.7
5,159,797 - AO353_23560 0.26 -0.9
5,160,055 + AO353_23560 0.37 +0.6
5,160,055 + AO353_23560 0.37 -1.3
5,160,055 + AO353_23560 0.37 -0.9
5,160,055 + AO353_23560 0.37 -1.6
5,160,055 + AO353_23560 0.37 +0.3
5,160,055 + AO353_23560 0.37 -0.2
5,160,056 - AO353_23560 0.37 -1.8
5,160,056 - AO353_23560 0.37 -1.2
5,160,056 - AO353_23560 0.37 +0.4
5,160,056 - AO353_23560 0.37 -1.1
5,160,056 - AO353_23560 0.37 -1.4
5,160,208 + AO353_23560 0.44 -0.3
5,160,209 - AO353_23560 0.44 -0.1
5,160,209 - AO353_23560 0.44 +0.6
5,160,223 + AO353_23560 0.45 -0.2
5,160,224 - AO353_23560 0.45 +0.6
5,160,224 - AO353_23560 0.45 +0.9
5,160,224 - AO353_23560 0.45 -0.8
5,160,292 + AO353_23560 0.48 -1.3
5,160,293 - AO353_23560 0.48 +0.2
5,160,298 + AO353_23560 0.48 -0.3
5,160,299 - AO353_23560 0.48 -0.1
5,160,515 - AO353_23560 0.57 -0.6
5,160,698 + AO353_23560 0.66 -0.9
5,160,698 + AO353_23560 0.66 +0.5
5,160,698 + AO353_23560 0.66 +0.4
5,160,698 + AO353_23560 0.66 +0.7
5,160,699 - AO353_23560 0.66 +0.5
5,160,699 - AO353_23560 0.66 -0.6
5,160,699 - AO353_23560 0.66 -0.6
5,160,699 - AO353_23560 0.66 -1.8
5,160,699 - +2.4
5,160,699 - AO353_23560 0.66 -1.5
5,160,775 + AO353_23560 0.69 -0.7
5,160,775 + AO353_23560 0.69 -0.1
5,160,919 + AO353_23560 0.75 +0.2
5,160,919 + AO353_23560 0.75 -0.8
5,160,919 + AO353_23560 0.75 -1.8
5,160,919 + AO353_23560 0.75 -0.8
5,160,920 - AO353_23560 0.75 -0.1
5,160,952 - AO353_23560 0.77 +0.4
5,160,960 + AO353_23560 0.77 +0.9
5,160,960 + AO353_23560 0.77 -1.1
5,160,960 + AO353_23560 0.77 +1.0
5,161,007 - AO353_23560 0.79 -0.2
5,161,007 - AO353_23560 0.79 -0.5
5,161,007 - AO353_23560 0.79 +1.4
5,161,007 - AO353_23560 0.79 -1.2
5,161,146 + AO353_23560 0.85 -0.3
5,161,146 + AO353_23560 0.85 -2.0
5,161,147 - AO353_23560 0.86 -0.4
5,161,156 + AO353_23560 0.86 -0.3
5,161,156 + AO353_23560 0.86 +0.7
5,161,157 - AO353_23560 0.86 -2.2
5,161,157 - AO353_23560 0.86 +0.8
5,161,157 - AO353_23560 0.86 -0.3
5,161,157 - AO353_23560 0.86 +0.1
5,161,157 - AO353_23560 0.86 -1.2
5,161,157 - AO353_23560 0.86 -1.9
5,161,351 + -1.1
5,161,447 + +0.1
5,161,447 + -2.6
5,161,447 + +2.4
5,161,447 + +0.9
5,161,447 + +0.9
5,161,448 - +0.3
5,161,448 - -2.1
5,161,487 + -0.3
5,161,488 - +1.4
5,161,557 + AO353_23565 0.11 +0.8
5,161,557 + AO353_23565 0.11 +1.1
5,161,557 + AO353_23565 0.11 +0.4
5,161,557 + AO353_23565 0.11 -1.0
5,161,558 - AO353_23565 0.11 +1.7
5,161,558 - AO353_23565 0.11 +1.1
5,161,558 - AO353_23565 0.11 +0.9
5,161,558 - AO353_23565 0.11 +0.4
5,161,558 - AO353_23565 0.11 -1.3
5,161,558 - AO353_23565 0.11 +1.8
5,161,558 - AO353_23565 0.11 +0.4
5,161,558 - AO353_23565 0.11 +0.2
5,161,558 - AO353_23565 0.11 +0.9
5,161,559 + AO353_23565 0.12 -0.1
5,161,559 + AO353_23565 0.12 +0.8
5,161,559 + AO353_23565 0.12 -0.8
5,161,559 + AO353_23565 0.12 -1.7
5,161,559 + AO353_23565 0.12 +1.0
5,161,560 - AO353_23565 0.12 -0.3
5,161,560 - AO353_23565 0.12 +0.8
5,161,560 - AO353_23565 0.12 +0.6
5,161,560 - AO353_23565 0.12 +1.1
5,161,560 - AO353_23565 0.12 -0.8
5,161,775 + AO353_23565 0.47 +0.6
5,161,919 + AO353_23565 0.70 +0.0
5,161,920 - AO353_23565 0.70 -0.4
5,161,944 + AO353_23565 0.74 -0.6
5,161,959 + AO353_23565 0.77 -0.6
5,161,959 + AO353_23565 0.77 +0.4
5,161,959 + AO353_23565 0.77 -1.4
5,162,103 + -1.0
5,162,104 - +0.4
5,162,162 + AO353_23570 0.11 -0.7
5,162,233 - AO353_23570 0.18 -1.4

Or see this region's nucleotide sequence