Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23060

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23055 and AO353_23060 overlap by 4 nucleotidesAO353_23060 and AO353_23065 are separated by 34 nucleotides AO353_23055: AO353_23055 - methylmalonyl-CoA decarboxylase, at 5,060,170 to 5,060,970 _23055 AO353_23060: AO353_23060 - CaiB/baiF CoA-transferase, at 5,060,967 to 5,062,223 _23060 AO353_23065: AO353_23065 - MFS transporter, at 5,062,258 to 5,063,580 _23065 Position (kb) 5060 5061 5062 5063Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.995 kb on + strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5059.996 kb on - strandat 5060.016 kb on - strandat 5060.031 kb on + strandat 5060.031 kb on + strandat 5060.031 kb on + strandat 5060.032 kb on - strandat 5060.032 kb on - strandat 5060.032 kb on - strandat 5060.033 kb on + strandat 5060.033 kb on + strandat 5060.123 kb on + strandat 5060.124 kb on - strandat 5060.134 kb on + strandat 5060.135 kb on - strandat 5060.135 kb on - strandat 5060.425 kb on + strand, within AO353_23055at 5060.425 kb on + strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.426 kb on - strand, within AO353_23055at 5060.488 kb on + strand, within AO353_23055at 5060.488 kb on + strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.489 kb on - strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.537 kb on + strand, within AO353_23055at 5060.538 kb on - strand, within AO353_23055at 5060.797 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.811 kb on + strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5060.812 kb on - strand, within AO353_23055at 5061.278 kb on + strand, within AO353_23060at 5061.278 kb on + strand, within AO353_23060at 5061.278 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.365 kb on + strand, within AO353_23060at 5061.366 kb on - strand, within AO353_23060at 5061.366 kb on - strand, within AO353_23060at 5061.456 kb on + strand, within AO353_23060at 5061.457 kb on - strand, within AO353_23060at 5061.457 kb on - strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.582 kb on + strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.583 kb on - strand, within AO353_23060at 5061.586 kb on + strand, within AO353_23060at 5061.586 kb on + strand, within AO353_23060at 5061.793 kb on + strandat 5061.793 kb on + strand, within AO353_23060at 5061.794 kb on - strand, within AO353_23060at 5061.904 kb on + strand, within AO353_23060at 5061.904 kb on + strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5061.905 kb on - strand, within AO353_23060at 5062.031 kb on + strand, within AO353_23060at 5062.032 kb on - strand, within AO353_23060at 5062.032 kb on - strand, within AO353_23060at 5062.041 kb on - strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.051 kb on + strand, within AO353_23060at 5062.052 kb on - strand, within AO353_23060at 5062.052 kb on - strand, within AO353_23060at 5062.052 kb on - strand, within AO353_23060at 5062.052 kb on - strandat 5062.052 kb on - strand, within AO353_23060at 5062.052 kb on - strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.054 kb on + strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.055 kb on - strand, within AO353_23060at 5062.223 kb on + strandat 5062.223 kb on + strandat 5062.259 kb on + strandat 5062.565 kb on + strand, within AO353_23065at 5062.566 kb on - strand, within AO353_23065at 5062.566 kb on - strand, within AO353_23065at 5062.566 kb on - strand, within AO353_23065at 5062.566 kb on - strand, within AO353_23065at 5062.566 kb on - strand, within AO353_23065at 5062.616 kb on + strand, within AO353_23065at 5062.616 kb on + strand, within AO353_23065at 5062.617 kb on - strand, within AO353_23065at 5062.617 kb on - strand, within AO353_23065at 5062.617 kb on - strand, within AO353_23065at 5062.684 kb on - strand, within AO353_23065at 5062.788 kb on - strand, within AO353_23065at 5062.788 kb on - strand, within AO353_23065at 5062.973 kb on + strand, within AO353_23065at 5062.973 kb on + strand, within AO353_23065at 5062.974 kb on - strand, within AO353_23065at 5062.974 kb on - strand, within AO353_23065at 5062.997 kb on - strand, within AO353_23065at 5063.027 kb on + strand, within AO353_23065at 5063.027 kb on + strand, within AO353_23065at 5063.027 kb on + strand, within AO353_23065at 5063.027 kb on + strand, within AO353_23065at 5063.027 kb on + strand, within AO353_23065at 5063.045 kb on + strand, within AO353_23065at 5063.045 kb on + strand, within AO353_23065at 5063.045 kb on + strand, within AO353_23065at 5063.045 kb on + strand, within AO353_23065at 5063.046 kb on - strand, within AO353_23065at 5063.046 kb on - strand, within AO353_23065at 5063.046 kb on - strand, within AO353_23065at 5063.046 kb on - strand, within AO353_23065at 5063.078 kb on + strand, within AO353_23065at 5063.078 kb on + strand, within AO353_23065at 5063.078 kb on + strand, within AO353_23065at 5063.079 kb on - strand, within AO353_23065at 5063.079 kb on - strand, within AO353_23065at 5063.079 kb on - strand, within AO353_23065at 5063.079 kb on - strandat 5063.081 kb on + strand, within AO353_23065at 5063.081 kb on + strand, within AO353_23065at 5063.096 kb on + strand, within AO353_23065at 5063.097 kb on - strand, within AO353_23065at 5063.097 kb on - strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.144 kb on + strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065at 5063.145 kb on - strand, within AO353_23065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,059,995 + +0.4
5,059,995 + -0.7
5,059,995 + -1.7
5,059,995 + -1.0
5,059,995 + -1.5
5,059,995 + -0.9
5,059,995 + -0.8
5,059,995 + -0.2
5,059,995 + -0.5
5,059,995 + -1.5
5,059,996 - -0.4
5,059,996 - -0.1
5,059,996 - +0.3
5,059,996 - -2.5
5,059,996 - +1.0
5,059,996 - -0.6
5,059,996 - +0.5
5,059,996 - -0.1
5,060,016 - +0.5
5,060,031 + -0.0
5,060,031 + -0.2
5,060,031 + -0.5
5,060,032 - +0.7
5,060,032 - -0.5
5,060,032 - +0.8
5,060,033 + +0.3
5,060,033 + -0.9
5,060,123 + +0.8
5,060,124 - -1.5
5,060,134 + -2.1
5,060,135 - -0.5
5,060,135 - +0.2
5,060,425 + AO353_23055 0.32 +1.1
5,060,425 + AO353_23055 0.32 -1.1
5,060,426 - AO353_23055 0.32 +2.0
5,060,426 - AO353_23055 0.32 +0.3
5,060,426 - AO353_23055 0.32 -0.5
5,060,426 - AO353_23055 0.32 +1.4
5,060,426 - AO353_23055 0.32 -1.0
5,060,488 + AO353_23055 0.40 -1.5
5,060,488 + AO353_23055 0.40 +0.6
5,060,489 - AO353_23055 0.40 -0.1
5,060,489 - AO353_23055 0.40 +1.1
5,060,489 - AO353_23055 0.40 +0.9
5,060,537 + AO353_23055 0.46 -0.3
5,060,537 + AO353_23055 0.46 -0.0
5,060,537 + AO353_23055 0.46 +1.1
5,060,537 + AO353_23055 0.46 -0.6
5,060,538 - AO353_23055 0.46 -0.1
5,060,797 + AO353_23055 0.78 +0.5
5,060,811 + AO353_23055 0.80 -0.1
5,060,811 + AO353_23055 0.80 +0.1
5,060,811 + AO353_23055 0.80 +0.4
5,060,811 + AO353_23055 0.80 -0.9
5,060,812 - AO353_23055 0.80 -2.8
5,060,812 - AO353_23055 0.80 -0.7
5,060,812 - AO353_23055 0.80 +0.2
5,060,812 - AO353_23055 0.80 -0.7
5,060,812 - AO353_23055 0.80 -0.6
5,060,812 - AO353_23055 0.80 +0.7
5,061,278 + AO353_23060 0.25 -0.9
5,061,278 + AO353_23060 0.25 -0.0
5,061,278 + AO353_23060 0.25 +0.7
5,061,365 + AO353_23060 0.32 +0.1
5,061,365 + AO353_23060 0.32 -0.1
5,061,365 + AO353_23060 0.32 -1.1
5,061,365 + AO353_23060 0.32 -1.0
5,061,366 - AO353_23060 0.32 +0.5
5,061,366 - AO353_23060 0.32 +0.8
5,061,456 + AO353_23060 0.39 -0.5
5,061,457 - AO353_23060 0.39 +0.1
5,061,457 - AO353_23060 0.39 +0.5
5,061,582 + AO353_23060 0.49 +0.9
5,061,582 + AO353_23060 0.49 -0.4
5,061,582 + AO353_23060 0.49 -1.6
5,061,582 + AO353_23060 0.49 +0.4
5,061,582 + AO353_23060 0.49 -0.1
5,061,582 + AO353_23060 0.49 -1.5
5,061,582 + AO353_23060 0.49 +1.1
5,061,582 + AO353_23060 0.49 -0.1
5,061,582 + AO353_23060 0.49 +1.0
5,061,583 - AO353_23060 0.49 +0.5
5,061,583 - AO353_23060 0.49 -0.8
5,061,583 - AO353_23060 0.49 -0.5
5,061,583 - AO353_23060 0.49 -0.7
5,061,586 + AO353_23060 0.49 -0.5
5,061,586 + AO353_23060 0.49 -0.7
5,061,793 + -0.7
5,061,793 + AO353_23060 0.66 -0.5
5,061,794 - AO353_23060 0.66 -0.4
5,061,904 + AO353_23060 0.75 -0.0
5,061,904 + AO353_23060 0.75 +1.1
5,061,905 - AO353_23060 0.75 +0.3
5,061,905 - AO353_23060 0.75 +0.2
5,061,905 - AO353_23060 0.75 +0.5
5,061,905 - AO353_23060 0.75 -0.3
5,062,031 + AO353_23060 0.85 -2.0
5,062,032 - AO353_23060 0.85 -0.6
5,062,032 - AO353_23060 0.85 +0.6
5,062,041 - AO353_23060 0.85 -0.0
5,062,051 + AO353_23060 0.86 +0.7
5,062,051 + AO353_23060 0.86 -1.1
5,062,051 + AO353_23060 0.86 +0.5
5,062,051 + AO353_23060 0.86 -2.9
5,062,051 + AO353_23060 0.86 -0.6
5,062,051 + AO353_23060 0.86 -1.1
5,062,051 + AO353_23060 0.86 +1.2
5,062,051 + AO353_23060 0.86 -0.1
5,062,051 + AO353_23060 0.86 +0.9
5,062,051 + AO353_23060 0.86 +0.9
5,062,051 + AO353_23060 0.86 -1.0
5,062,052 - AO353_23060 0.86 -0.5
5,062,052 - AO353_23060 0.86 +1.2
5,062,052 - AO353_23060 0.86 -1.0
5,062,052 - +0.1
5,062,052 - AO353_23060 0.86 -1.9
5,062,052 - AO353_23060 0.86 -2.1
5,062,054 + AO353_23060 0.86 -1.0
5,062,054 + AO353_23060 0.86 -0.1
5,062,054 + AO353_23060 0.86 -1.1
5,062,054 + AO353_23060 0.86 +1.0
5,062,054 + AO353_23060 0.86 -0.6
5,062,054 + AO353_23060 0.86 -0.6
5,062,054 + AO353_23060 0.86 +0.8
5,062,054 + AO353_23060 0.86 +0.6
5,062,054 + AO353_23060 0.86 +0.7
5,062,055 - AO353_23060 0.87 -0.5
5,062,055 - AO353_23060 0.87 +0.3
5,062,055 - AO353_23060 0.87 +0.5
5,062,055 - AO353_23060 0.87 -0.8
5,062,055 - AO353_23060 0.87 -0.9
5,062,055 - AO353_23060 0.87 -1.2
5,062,055 - AO353_23060 0.87 +1.9
5,062,055 - AO353_23060 0.87 -0.2
5,062,055 - AO353_23060 0.87 +0.5
5,062,223 + +0.2
5,062,223 + -0.7
5,062,259 + +0.1
5,062,565 + AO353_23065 0.23 -1.4
5,062,566 - AO353_23065 0.23 -1.5
5,062,566 - AO353_23065 0.23 -0.6
5,062,566 - AO353_23065 0.23 -1.2
5,062,566 - AO353_23065 0.23 -2.3
5,062,566 - AO353_23065 0.23 -0.8
5,062,616 + AO353_23065 0.27 -0.9
5,062,616 + AO353_23065 0.27 -0.4
5,062,617 - AO353_23065 0.27 -0.3
5,062,617 - AO353_23065 0.27 +1.1
5,062,617 - AO353_23065 0.27 -0.4
5,062,684 - AO353_23065 0.32 -0.9
5,062,788 - AO353_23065 0.40 -0.6
5,062,788 - AO353_23065 0.40 -0.2
5,062,973 + AO353_23065 0.54 -1.5
5,062,973 + AO353_23065 0.54 -0.4
5,062,974 - AO353_23065 0.54 +0.2
5,062,974 - AO353_23065 0.54 -0.1
5,062,997 - AO353_23065 0.56 -0.4
5,063,027 + AO353_23065 0.58 -0.0
5,063,027 + AO353_23065 0.58 -1.1
5,063,027 + AO353_23065 0.58 -0.0
5,063,027 + AO353_23065 0.58 -0.7
5,063,027 + AO353_23065 0.58 -0.7
5,063,045 + AO353_23065 0.59 -1.1
5,063,045 + AO353_23065 0.59 -0.8
5,063,045 + AO353_23065 0.59 +2.4
5,063,045 + AO353_23065 0.59 -0.6
5,063,046 - AO353_23065 0.60 +0.1
5,063,046 - AO353_23065 0.60 -1.1
5,063,046 - AO353_23065 0.60 +1.9
5,063,046 - AO353_23065 0.60 -0.1
5,063,078 + AO353_23065 0.62 +1.1
5,063,078 + AO353_23065 0.62 +1.6
5,063,078 + AO353_23065 0.62 -0.7
5,063,079 - AO353_23065 0.62 +1.4
5,063,079 - AO353_23065 0.62 -1.8
5,063,079 - AO353_23065 0.62 -1.3
5,063,079 - +0.1
5,063,081 + AO353_23065 0.62 +0.1
5,063,081 + AO353_23065 0.62 -0.8
5,063,096 + AO353_23065 0.63 -1.0
5,063,097 - AO353_23065 0.63 -0.4
5,063,097 - AO353_23065 0.63 +1.9
5,063,144 + AO353_23065 0.67 +1.1
5,063,144 + AO353_23065 0.67 +0.3
5,063,144 + AO353_23065 0.67 +0.9
5,063,144 + AO353_23065 0.67 -0.8
5,063,144 + AO353_23065 0.67 -0.6
5,063,144 + AO353_23065 0.67 +0.1
5,063,144 + AO353_23065 0.67 +0.6
5,063,144 + AO353_23065 0.67 -1.1
5,063,144 + AO353_23065 0.67 -0.1
5,063,144 + AO353_23065 0.67 -1.5
5,063,144 + AO353_23065 0.67 +1.4
5,063,145 - AO353_23065 0.67 -0.0
5,063,145 - AO353_23065 0.67 -0.6
5,063,145 - AO353_23065 0.67 -1.4
5,063,145 - AO353_23065 0.67 -1.5
5,063,145 - AO353_23065 0.67 +0.9
5,063,145 - AO353_23065 0.67 -1.2
5,063,145 - AO353_23065 0.67 -0.6
5,063,145 - AO353_23065 0.67 -0.7
5,063,145 - AO353_23065 0.67 +0.4
5,063,145 - AO353_23065 0.67 -0.5
5,063,145 - AO353_23065 0.67 -1.7
5,063,145 - AO353_23065 0.67 -0.5

Or see this region's nucleotide sequence