Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18370 and AO353_18375 are separated by 97 nucleotides AO353_18375 and AO353_18380 overlap by 53 nucleotides AO353_18380 and AO353_18385 are separated by 103 nucleotides
AO353_18370: AO353_18370 - GntR family transcriptional regulator, at 4,046,304 to 4,047,140
_18370
AO353_18375: AO353_18375 - hypothetical protein, at 4,047,238 to 4,048,167
_18375
AO353_18380: AO353_18380 - hypothetical protein, at 4,048,115 to 4,049,293
_18380
AO353_18385: AO353_18385 - LysR family transcriptional regulator, at 4,049,397 to 4,050,323
_18385
Position (kb)
4048
4049
4050 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4047.176 kb on - strand at 4047.195 kb on - strand at 4047.201 kb on + strand at 4047.201 kb on + strand at 4047.201 kb on + strand at 4047.201 kb on + strand at 4047.201 kb on + strand at 4047.202 kb on - strand at 4047.202 kb on - strand at 4047.550 kb on + strand, within AO353_18375 at 4047.550 kb on + strand, within AO353_18375 at 4047.551 kb on - strand, within AO353_18375 at 4047.551 kb on - strand, within AO353_18375 at 4047.551 kb on - strand, within AO353_18375 at 4047.645 kb on + strand, within AO353_18375 at 4047.645 kb on + strand, within AO353_18375 at 4047.646 kb on - strand, within AO353_18375 at 4047.651 kb on + strand, within AO353_18375 at 4047.651 kb on + strand, within AO353_18375 at 4047.652 kb on - strand, within AO353_18375 at 4047.815 kb on - strand, within AO353_18375 at 4047.815 kb on - strand, within AO353_18375 at 4047.815 kb on - strand, within AO353_18375 at 4047.815 kb on - strand, within AO353_18375 at 4047.861 kb on - strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.946 kb on + strand, within AO353_18375 at 4047.947 kb on - strand, within AO353_18375 at 4047.947 kb on - strand, within AO353_18375 at 4048.269 kb on - strand, within AO353_18380 at 4048.425 kb on - strand, within AO353_18380 at 4048.425 kb on - strand, within AO353_18380 at 4048.425 kb on - strand, within AO353_18380 at 4048.425 kb on - strand, within AO353_18380 at 4048.510 kb on + strand, within AO353_18380 at 4048.511 kb on - strand, within AO353_18380 at 4048.644 kb on + strand, within AO353_18380 at 4048.644 kb on + strand, within AO353_18380 at 4048.644 kb on + strand, within AO353_18380 at 4048.644 kb on + strand, within AO353_18380 at 4048.644 kb on + strand, within AO353_18380 at 4048.645 kb on - strand, within AO353_18380 at 4048.656 kb on + strand, within AO353_18380 at 4048.656 kb on + strand, within AO353_18380 at 4048.656 kb on + strand, within AO353_18380 at 4048.657 kb on - strand, within AO353_18380 at 4048.794 kb on + strand, within AO353_18380 at 4048.794 kb on + strand, within AO353_18380 at 4048.795 kb on - strand, within AO353_18380 at 4048.795 kb on - strand, within AO353_18380 at 4048.795 kb on - strand, within AO353_18380 at 4048.795 kb on - strand, within AO353_18380 at 4048.795 kb on - strand, within AO353_18380 at 4048.889 kb on + strand, within AO353_18380 at 4048.976 kb on + strand, within AO353_18380 at 4048.976 kb on + strand, within AO353_18380 at 4048.976 kb on + strand, within AO353_18380 at 4048.977 kb on - strand, within AO353_18380 at 4048.977 kb on - strand, within AO353_18380 at 4048.977 kb on - strand, within AO353_18380 at 4049.045 kb on + strand, within AO353_18380 at 4049.045 kb on + strand, within AO353_18380 at 4049.045 kb on + strand, within AO353_18380 at 4049.045 kb on + strand, within AO353_18380 at 4049.046 kb on - strand, within AO353_18380 at 4049.046 kb on - strand, within AO353_18380 at 4049.133 kb on + strand, within AO353_18380 at 4049.133 kb on + strand, within AO353_18380 at 4049.133 kb on + strand, within AO353_18380 at 4049.133 kb on + strand, within AO353_18380 at 4049.142 kb on + strand, within AO353_18380 at 4049.142 kb on + strand, within AO353_18380 at 4049.142 kb on + strand, within AO353_18380 at 4049.143 kb on - strand, within AO353_18380 at 4049.143 kb on - strand, within AO353_18380 at 4049.143 kb on - strand, within AO353_18380 at 4049.273 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.279 kb on + strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.280 kb on - strand at 4049.281 kb on + strand at 4049.281 kb on + strand at 4049.281 kb on + strand at 4049.331 kb on + strand at 4049.332 kb on - strand at 4049.332 kb on - strand at 4049.332 kb on - strand at 4049.530 kb on + strand, within AO353_18385 at 4049.530 kb on + strand, within AO353_18385 at 4049.530 kb on + strand, within AO353_18385 at 4049.530 kb on + strand, within AO353_18385 at 4049.531 kb on - strand, within AO353_18385 at 4049.531 kb on - strand, within AO353_18385 at 4049.531 kb on - strand, within AO353_18385 at 4049.531 kb on - strand, within AO353_18385 at 4049.584 kb on + strand, within AO353_18385 at 4049.584 kb on + strand, within AO353_18385 at 4049.584 kb on + strand, within AO353_18385 at 4049.584 kb on + strand, within AO353_18385 at 4049.585 kb on - strand, within AO353_18385 at 4049.585 kb on - strand, within AO353_18385 at 4049.585 kb on - strand, within AO353_18385 at 4049.595 kb on + strand, within AO353_18385 at 4049.596 kb on - strand, within AO353_18385 at 4049.596 kb on - strand, within AO353_18385 at 4049.596 kb on - strand, within AO353_18385 at 4049.596 kb on - strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.685 kb on + strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.686 kb on - strand, within AO353_18385 at 4049.740 kb on - strand, within AO353_18385 at 4049.740 kb on - strand, within AO353_18385 at 4049.740 kb on - strand, within AO353_18385 at 4050.009 kb on + strand, within AO353_18385 at 4050.048 kb on + strand, within AO353_18385 at 4050.048 kb on + strand, within AO353_18385 at 4050.049 kb on - strand, within AO353_18385 at 4050.203 kb on + strand, within AO353_18385 at 4050.204 kb on - strand, within AO353_18385 at 4050.204 kb on - strand, within AO353_18385 at 4050.252 kb on + strand at 4050.252 kb on + strand at 4050.252 kb on + strand at 4050.252 kb on + strand at 4050.253 kb on - strand at 4050.253 kb on - strand at 4050.253 kb on - strand at 4050.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,047,176 - -0.1 4,047,195 - +0.8 4,047,201 + -0.2 4,047,201 + -0.2 4,047,201 + +0.2 4,047,201 + +1.3 4,047,201 + +0.3 4,047,202 - +0.9 4,047,202 - -0.6 4,047,550 + AO353_18375 0.34 +0.1 4,047,550 + AO353_18375 0.34 +0.5 4,047,551 - AO353_18375 0.34 +0.4 4,047,551 - AO353_18375 0.34 -0.8 4,047,551 - AO353_18375 0.34 -0.6 4,047,645 + AO353_18375 0.44 +0.3 4,047,645 + AO353_18375 0.44 -0.9 4,047,646 - AO353_18375 0.44 -0.0 4,047,651 + AO353_18375 0.44 +0.2 4,047,651 + AO353_18375 0.44 +0.3 4,047,652 - AO353_18375 0.45 -0.2 4,047,815 - AO353_18375 0.62 +0.5 4,047,815 - AO353_18375 0.62 -0.5 4,047,815 - AO353_18375 0.62 -0.5 4,047,815 - AO353_18375 0.62 +0.7 4,047,861 - AO353_18375 0.67 -0.7 4,047,946 + AO353_18375 0.76 -1.1 4,047,946 + AO353_18375 0.76 +0.0 4,047,946 + AO353_18375 0.76 +2.0 4,047,946 + AO353_18375 0.76 +0.0 4,047,946 + AO353_18375 0.76 -0.5 4,047,946 + AO353_18375 0.76 -0.4 4,047,947 - AO353_18375 0.76 -0.5 4,047,947 - AO353_18375 0.76 -0.5 4,048,269 - AO353_18380 0.13 -0.4 4,048,425 - AO353_18380 0.26 -0.4 4,048,425 - AO353_18380 0.26 +0.1 4,048,425 - AO353_18380 0.26 -1.5 4,048,425 - AO353_18380 0.26 +0.2 4,048,510 + AO353_18380 0.34 -0.4 4,048,511 - AO353_18380 0.34 -0.6 4,048,644 + AO353_18380 0.45 -0.8 4,048,644 + AO353_18380 0.45 -0.3 4,048,644 + AO353_18380 0.45 +0.2 4,048,644 + AO353_18380 0.45 -0.6 4,048,644 + AO353_18380 0.45 -0.4 4,048,645 - AO353_18380 0.45 -0.5 4,048,656 + AO353_18380 0.46 +0.0 4,048,656 + AO353_18380 0.46 -0.2 4,048,656 + AO353_18380 0.46 +1.2 4,048,657 - AO353_18380 0.46 -0.6 4,048,794 + AO353_18380 0.58 +0.4 4,048,794 + AO353_18380 0.58 +0.3 4,048,795 - AO353_18380 0.58 +0.5 4,048,795 - AO353_18380 0.58 -1.4 4,048,795 - AO353_18380 0.58 -1.4 4,048,795 - AO353_18380 0.58 -1.1 4,048,795 - AO353_18380 0.58 +0.0 4,048,889 + AO353_18380 0.66 +1.1 4,048,976 + AO353_18380 0.73 +1.1 4,048,976 + AO353_18380 0.73 -1.1 4,048,976 + AO353_18380 0.73 -1.1 4,048,977 - AO353_18380 0.73 +0.8 4,048,977 - AO353_18380 0.73 -2.3 4,048,977 - AO353_18380 0.73 +2.1 4,049,045 + AO353_18380 0.79 -0.0 4,049,045 + AO353_18380 0.79 +1.1 4,049,045 + AO353_18380 0.79 +0.2 4,049,045 + AO353_18380 0.79 +0.5 4,049,046 - AO353_18380 0.79 -0.8 4,049,046 - AO353_18380 0.79 +0.5 4,049,133 + AO353_18380 0.86 -0.6 4,049,133 + AO353_18380 0.86 +0.6 4,049,133 + AO353_18380 0.86 -0.6 4,049,133 + AO353_18380 0.86 +0.2 4,049,142 + AO353_18380 0.87 +0.4 4,049,142 + AO353_18380 0.87 -1.2 4,049,142 + AO353_18380 0.87 +0.8 4,049,143 - AO353_18380 0.87 +1.5 4,049,143 - AO353_18380 0.87 -1.2 4,049,143 - AO353_18380 0.87 +0.9 4,049,273 + +0.7 4,049,279 + +1.1 4,049,279 + -1.5 4,049,279 + -0.6 4,049,279 + -0.4 4,049,279 + +0.0 4,049,279 + +1.5 4,049,279 + +0.1 4,049,279 + +0.0 4,049,279 + +0.6 4,049,279 + +0.1 4,049,279 + +1.0 4,049,279 + -1.3 4,049,279 + +0.5 4,049,279 + -1.0 4,049,280 - -0.8 4,049,280 - +0.0 4,049,280 - +2.2 4,049,280 - +0.3 4,049,280 - -0.3 4,049,280 - -0.7 4,049,280 - -0.8 4,049,280 - -1.4 4,049,280 - +0.0 4,049,280 - -0.4 4,049,280 - +1.2 4,049,280 - -2.7 4,049,281 + +0.8 4,049,281 + -0.5 4,049,281 + +0.0 4,049,331 + +1.6 4,049,332 - +1.1 4,049,332 - -0.4 4,049,332 - +0.6 4,049,530 + AO353_18385 0.14 +1.1 4,049,530 + AO353_18385 0.14 +0.2 4,049,530 + AO353_18385 0.14 +0.8 4,049,530 + AO353_18385 0.14 +0.4 4,049,531 - AO353_18385 0.14 +1.3 4,049,531 - AO353_18385 0.14 +0.1 4,049,531 - AO353_18385 0.14 +0.5 4,049,531 - AO353_18385 0.14 +0.2 4,049,584 + AO353_18385 0.20 -0.3 4,049,584 + AO353_18385 0.20 +0.2 4,049,584 + AO353_18385 0.20 +0.6 4,049,584 + AO353_18385 0.20 +0.6 4,049,585 - AO353_18385 0.20 +1.3 4,049,585 - AO353_18385 0.20 +1.2 4,049,585 - AO353_18385 0.20 -0.6 4,049,595 + AO353_18385 0.21 +1.2 4,049,596 - AO353_18385 0.21 +1.8 4,049,596 - AO353_18385 0.21 -0.7 4,049,596 - AO353_18385 0.21 +0.0 4,049,596 - AO353_18385 0.21 +0.5 4,049,685 + AO353_18385 0.31 -0.8 4,049,685 + AO353_18385 0.31 +1.1 4,049,685 + AO353_18385 0.31 +0.9 4,049,685 + AO353_18385 0.31 -0.3 4,049,685 + AO353_18385 0.31 +0.6 4,049,685 + AO353_18385 0.31 +0.4 4,049,685 + AO353_18385 0.31 -0.5 4,049,685 + AO353_18385 0.31 -0.2 4,049,685 + AO353_18385 0.31 -0.2 4,049,685 + AO353_18385 0.31 -1.4 4,049,685 + AO353_18385 0.31 -0.0 4,049,686 - AO353_18385 0.31 +0.3 4,049,686 - AO353_18385 0.31 +0.7 4,049,686 - AO353_18385 0.31 +1.1 4,049,686 - AO353_18385 0.31 -0.8 4,049,686 - AO353_18385 0.31 +0.4 4,049,686 - AO353_18385 0.31 +0.0 4,049,686 - AO353_18385 0.31 -0.7 4,049,686 - AO353_18385 0.31 +0.8 4,049,686 - AO353_18385 0.31 -0.6 4,049,686 - AO353_18385 0.31 +0.7 4,049,686 - AO353_18385 0.31 -1.0 4,049,686 - AO353_18385 0.31 +0.6 4,049,740 - AO353_18385 0.37 +1.6 4,049,740 - AO353_18385 0.37 -1.2 4,049,740 - AO353_18385 0.37 -0.0 4,050,009 + AO353_18385 0.66 -1.7 4,050,048 + AO353_18385 0.70 -0.6 4,050,048 + AO353_18385 0.70 -1.4 4,050,049 - AO353_18385 0.70 -1.6 4,050,203 + AO353_18385 0.87 -0.9 4,050,204 - AO353_18385 0.87 -0.8 4,050,204 - AO353_18385 0.87 -0.7 4,050,252 + -0.6 4,050,252 + +0.1 4,050,252 + +0.0 4,050,252 + +1.2 4,050,253 - -0.1 4,050,253 - +2.1 4,050,253 - +0.2 4,050,253 - +0.7
Or see this region's nucleotide sequence