Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12860

Experiment: L-Isoleucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12855 and AO353_12860 are separated by 337 nucleotidesAO353_12860 and AO353_12865 are separated by 11 nucleotides AO353_12855: AO353_12855 - phosphodiesterase, at 2,841,331 to 2,842,725 _12855 AO353_12860: AO353_12860 - dihydrolipoamide acetyltransferase, at 2,843,063 to 2,844,697 _12860 AO353_12865: AO353_12865 - pyruvate dehydrogenase, at 2,844,709 to 2,847,354 _12865 Position (kb) 2843 2844 2845Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2842.072 kb on + strand, within AO353_12855at 2842.072 kb on + strand, within AO353_12855at 2842.073 kb on - strand, within AO353_12855at 2842.097 kb on + strand, within AO353_12855at 2842.097 kb on + strand, within AO353_12855at 2842.097 kb on + strand, within AO353_12855at 2842.097 kb on + strand, within AO353_12855at 2842.097 kb on + strand, within AO353_12855at 2842.098 kb on - strand, within AO353_12855at 2842.098 kb on - strand, within AO353_12855at 2842.098 kb on - strand, within AO353_12855at 2842.098 kb on - strand, within AO353_12855at 2842.117 kb on + strand, within AO353_12855at 2842.117 kb on + strand, within AO353_12855at 2842.118 kb on - strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.126 kb on + strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.127 kb on - strand, within AO353_12855at 2842.128 kb on + strand, within AO353_12855at 2842.128 kb on + strand, within AO353_12855at 2842.128 kb on + strand, within AO353_12855at 2842.129 kb on - strand, within AO353_12855at 2842.154 kb on + strand, within AO353_12855at 2842.154 kb on + strand, within AO353_12855at 2842.155 kb on - strand, within AO353_12855at 2842.175 kb on + strand, within AO353_12855at 2842.195 kb on + strand, within AO353_12855at 2842.195 kb on + strand, within AO353_12855at 2842.195 kb on + strand, within AO353_12855at 2842.195 kb on + strand, within AO353_12855at 2842.196 kb on - strand, within AO353_12855at 2842.196 kb on - strand, within AO353_12855at 2842.196 kb on - strand, within AO353_12855at 2842.196 kb on - strand, within AO353_12855at 2842.214 kb on + strand, within AO353_12855at 2842.215 kb on - strand, within AO353_12855at 2842.362 kb on + strand, within AO353_12855at 2842.362 kb on + strand, within AO353_12855at 2842.362 kb on + strand, within AO353_12855at 2842.362 kb on + strand, within AO353_12855at 2842.363 kb on - strand, within AO353_12855at 2842.363 kb on - strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.364 kb on + strand, within AO353_12855at 2842.365 kb on - strand, within AO353_12855at 2842.365 kb on - strand, within AO353_12855at 2842.365 kb on - strand, within AO353_12855at 2842.365 kb on - strand, within AO353_12855at 2842.365 kb on - strand, within AO353_12855at 2842.409 kb on + strand, within AO353_12855at 2842.409 kb on + strand, within AO353_12855at 2842.409 kb on + strand, within AO353_12855at 2842.410 kb on - strand, within AO353_12855at 2842.410 kb on - strand, within AO353_12855at 2842.435 kb on + strand, within AO353_12855at 2842.435 kb on + strand, within AO353_12855at 2842.435 kb on + strand, within AO353_12855at 2842.435 kb on + strand, within AO353_12855at 2842.435 kb on + strand, within AO353_12855at 2842.436 kb on - strand, within AO353_12855at 2842.436 kb on - strand, within AO353_12855at 2842.436 kb on - strand, within AO353_12855at 2842.476 kb on + strand, within AO353_12855at 2842.476 kb on + strand, within AO353_12855at 2842.503 kb on - strand, within AO353_12855at 2842.503 kb on - strand, within AO353_12855at 2842.596 kb on + strandat 2842.618 kb on + strandat 2842.618 kb on + strandat 2842.619 kb on - strandat 2842.619 kb on - strandat 2842.619 kb on - strandat 2842.649 kb on - strandat 2842.680 kb on + strandat 2842.759 kb on + strandat 2842.805 kb on + strandat 2842.805 kb on + strandat 2842.806 kb on - strandat 2842.823 kb on - strandat 2842.826 kb on + strandat 2842.826 kb on + strandat 2842.826 kb on + strandat 2842.826 kb on + strandat 2842.826 kb on + strandat 2842.827 kb on - strandat 2842.833 kb on - strandat 2842.833 kb on - strandat 2842.833 kb on - strandat 2842.836 kb on + strandat 2842.836 kb on + strandat 2842.836 kb on + strandat 2842.836 kb on + strandat 2842.836 kb on + strandat 2842.837 kb on - strandat 2842.862 kb on + strandat 2842.903 kb on + strandat 2842.903 kb on + strandat 2842.903 kb on + strandat 2842.903 kb on + strandat 2842.903 kb on + strandat 2842.903 kb on + strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.904 kb on - strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.907 kb on + strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.908 kb on - strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.938 kb on + strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.939 kb on - strandat 2842.996 kb on + strandat 2842.996 kb on + strandat 2842.997 kb on - strandat 2842.997 kb on - strandat 2842.997 kb on - strandat 2842.997 kb on - strandat 2843.065 kb on - strandat 2843.065 kb on - strandat 2844.963 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
remove
2,842,072 + AO353_12855 0.53 +0.2
2,842,072 + AO353_12855 0.53 -0.4
2,842,073 - AO353_12855 0.53 +0.4
2,842,097 + AO353_12855 0.55 +0.1
2,842,097 + AO353_12855 0.55 -0.5
2,842,097 + AO353_12855 0.55 -0.5
2,842,097 + AO353_12855 0.55 +0.7
2,842,097 + AO353_12855 0.55 +0.9
2,842,098 - AO353_12855 0.55 -2.2
2,842,098 - AO353_12855 0.55 +0.1
2,842,098 - AO353_12855 0.55 -0.9
2,842,098 - AO353_12855 0.55 -0.5
2,842,117 + AO353_12855 0.56 +1.5
2,842,117 + AO353_12855 0.56 -1.0
2,842,118 - AO353_12855 0.56 -0.3
2,842,126 + AO353_12855 0.57 -0.4
2,842,126 + AO353_12855 0.57 -0.2
2,842,126 + AO353_12855 0.57 +1.6
2,842,126 + AO353_12855 0.57 -0.6
2,842,126 + AO353_12855 0.57 +0.1
2,842,126 + AO353_12855 0.57 +0.0
2,842,126 + AO353_12855 0.57 +0.8
2,842,126 + AO353_12855 0.57 +0.6
2,842,126 + AO353_12855 0.57 +0.4
2,842,126 + AO353_12855 0.57 -0.5
2,842,126 + AO353_12855 0.57 -0.2
2,842,126 + AO353_12855 0.57 +0.1
2,842,126 + AO353_12855 0.57 +2.9
2,842,126 + AO353_12855 0.57 +0.0
2,842,126 + AO353_12855 0.57 +0.6
2,842,126 + AO353_12855 0.57 -0.9
2,842,127 - AO353_12855 0.57 -0.9
2,842,127 - AO353_12855 0.57 +0.5
2,842,127 - AO353_12855 0.57 +0.6
2,842,127 - AO353_12855 0.57 +0.1
2,842,127 - AO353_12855 0.57 -2.7
2,842,127 - AO353_12855 0.57 -1.1
2,842,127 - AO353_12855 0.57 -1.0
2,842,128 + AO353_12855 0.57 -0.5
2,842,128 + AO353_12855 0.57 +0.6
2,842,128 + AO353_12855 0.57 +0.5
2,842,129 - AO353_12855 0.57 -1.3
2,842,154 + AO353_12855 0.59 +0.4
2,842,154 + AO353_12855 0.59 -0.4
2,842,155 - AO353_12855 0.59 -1.3
2,842,175 + AO353_12855 0.61 -1.8
2,842,195 + AO353_12855 0.62 -0.8
2,842,195 + AO353_12855 0.62 +0.4
2,842,195 + AO353_12855 0.62 -0.2
2,842,195 + AO353_12855 0.62 -0.4
2,842,196 - AO353_12855 0.62 +0.2
2,842,196 - AO353_12855 0.62 +2.8
2,842,196 - AO353_12855 0.62 +0.1
2,842,196 - AO353_12855 0.62 +0.1
2,842,214 + AO353_12855 0.63 +0.3
2,842,215 - AO353_12855 0.63 +0.7
2,842,362 + AO353_12855 0.74 +0.0
2,842,362 + AO353_12855 0.74 +0.5
2,842,362 + AO353_12855 0.74 +0.1
2,842,362 + AO353_12855 0.74 -0.3
2,842,363 - AO353_12855 0.74 -0.9
2,842,363 - AO353_12855 0.74 -1.2
2,842,364 + AO353_12855 0.74 +0.1
2,842,364 + AO353_12855 0.74 +0.0
2,842,364 + AO353_12855 0.74 +0.1
2,842,364 + AO353_12855 0.74 +1.3
2,842,364 + AO353_12855 0.74 +0.3
2,842,364 + AO353_12855 0.74 -0.8
2,842,364 + AO353_12855 0.74 -0.0
2,842,364 + AO353_12855 0.74 +1.1
2,842,365 - AO353_12855 0.74 +0.5
2,842,365 - AO353_12855 0.74 +1.6
2,842,365 - AO353_12855 0.74 +0.5
2,842,365 - AO353_12855 0.74 +1.3
2,842,365 - AO353_12855 0.74 +0.8
2,842,409 + AO353_12855 0.77 -0.4
2,842,409 + AO353_12855 0.77 +0.5
2,842,409 + AO353_12855 0.77 +0.1
2,842,410 - AO353_12855 0.77 +1.0
2,842,410 - AO353_12855 0.77 -0.9
2,842,435 + AO353_12855 0.79 -1.5
2,842,435 + AO353_12855 0.79 -1.6
2,842,435 + AO353_12855 0.79 +0.2
2,842,435 + AO353_12855 0.79 -0.5
2,842,435 + AO353_12855 0.79 -1.3
2,842,436 - AO353_12855 0.79 -1.7
2,842,436 - AO353_12855 0.79 -1.0
2,842,436 - AO353_12855 0.79 -0.0
2,842,476 + AO353_12855 0.82 -0.4
2,842,476 + AO353_12855 0.82 +2.2
2,842,503 - AO353_12855 0.84 +1.3
2,842,503 - AO353_12855 0.84 +1.4
2,842,596 + -0.9
2,842,618 + +0.1
2,842,618 + -0.8
2,842,619 - +0.1
2,842,619 - +0.8
2,842,619 - -0.7
2,842,649 - -0.1
2,842,680 + -1.0
2,842,759 + +0.8
2,842,805 + -0.4
2,842,805 + -0.3
2,842,806 - -0.7
2,842,823 - -0.1
2,842,826 + -1.3
2,842,826 + -0.6
2,842,826 + +0.4
2,842,826 + -1.3
2,842,826 + -3.0
2,842,827 - +0.6
2,842,833 - +0.1
2,842,833 - -0.1
2,842,833 - -0.8
2,842,836 + -0.8
2,842,836 + +0.2
2,842,836 + -0.8
2,842,836 + +1.2
2,842,836 + +0.0
2,842,837 - +0.6
2,842,862 + +2.0
2,842,903 + +0.9
2,842,903 + -0.2
2,842,903 + +0.1
2,842,903 + +0.1
2,842,903 + -1.2
2,842,903 + +0.3
2,842,904 - -0.9
2,842,904 - -1.0
2,842,904 - -1.1
2,842,904 - +0.9
2,842,904 - +0.3
2,842,904 - +2.2
2,842,904 - -2.2
2,842,904 - -2.0
2,842,904 - +1.1
2,842,904 - -2.0
2,842,904 - +0.9
2,842,907 + -1.7
2,842,907 + +0.1
2,842,907 + -0.9
2,842,907 + -0.7
2,842,907 + +1.3
2,842,907 + -0.4
2,842,907 + -1.2
2,842,907 + +0.3
2,842,908 - +2.1
2,842,908 - +0.9
2,842,908 - -0.2
2,842,908 - +0.6
2,842,908 - +0.2
2,842,908 - -1.3
2,842,908 - +0.6
2,842,908 - -0.5
2,842,908 - +1.6
2,842,938 + +0.9
2,842,938 + -0.8
2,842,938 + +1.1
2,842,938 + +0.1
2,842,938 + -0.5
2,842,938 + +0.3
2,842,938 + +1.2
2,842,938 + +0.4
2,842,938 + +0.5
2,842,938 + -2.2
2,842,938 + +0.1
2,842,939 - -0.0
2,842,939 - +1.0
2,842,939 - +0.8
2,842,939 - -0.9
2,842,939 - +0.3
2,842,939 - -0.2
2,842,939 - +0.7
2,842,939 - +1.1
2,842,939 - +0.6
2,842,939 - -0.6
2,842,996 + +0.3
2,842,996 + +2.8
2,842,997 - +0.6
2,842,997 - -0.5
2,842,997 - +0.5
2,842,997 - -0.1
2,843,065 - +0.1
2,843,065 - +0.3
2,844,963 - +1.1

Or see this region's nucleotide sequence