Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12205

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12200 and AO353_12205 are separated by 299 nucleotidesAO353_12205 and AO353_12210 are separated by 3 nucleotidesAO353_12210 and AO353_12215 are separated by 129 nucleotides AO353_12200: AO353_12200 - hypothetical protein, at 2,683,563 to 2,684,927 _12200 AO353_12205: AO353_12205 - fructose 1,6-bisphosphatase, at 2,685,227 to 2,686,237 _12205 AO353_12210: AO353_12210 - hypothetical protein, at 2,686,241 to 2,686,843 _12210 AO353_12215: AO353_12215 - chemotaxis protein, at 2,686,973 to 2,688,853 _12215 Position (kb) 2685 2686 2687Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2684.268 kb on + strand, within AO353_12200at 2684.269 kb on - strand, within AO353_12200at 2684.269 kb on - strand, within AO353_12200at 2684.269 kb on - strand, within AO353_12200at 2684.331 kb on + strand, within AO353_12200at 2684.331 kb on + strand, within AO353_12200at 2684.331 kb on + strand, within AO353_12200at 2684.331 kb on + strand, within AO353_12200at 2684.331 kb on + strand, within AO353_12200at 2684.604 kb on + strand, within AO353_12200at 2684.604 kb on + strand, within AO353_12200at 2684.604 kb on + strand, within AO353_12200at 2684.605 kb on - strand, within AO353_12200at 2684.655 kb on + strand, within AO353_12200at 2684.684 kb on + strand, within AO353_12200at 2684.685 kb on - strand, within AO353_12200at 2684.724 kb on + strand, within AO353_12200at 2684.725 kb on - strand, within AO353_12200at 2684.725 kb on - strand, within AO353_12200at 2684.995 kb on - strandat 2685.003 kb on + strandat 2685.003 kb on + strandat 2685.003 kb on + strandat 2685.003 kb on + strandat 2685.009 kb on + strandat 2685.009 kb on + strandat 2685.010 kb on - strandat 2685.023 kb on - strandat 2685.023 kb on - strandat 2685.023 kb on - strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.095 kb on + strandat 2685.111 kb on + strandat 2685.111 kb on + strandat 2685.111 kb on + strandat 2685.112 kb on - strandat 2685.136 kb on + strandat 2685.136 kb on + strandat 2685.136 kb on + strandat 2685.157 kb on + strandat 2685.157 kb on + strandat 2685.157 kb on + strandat 2686.235 kb on + strandat 2686.236 kb on - strandat 2686.236 kb on - strandat 2686.236 kb on - strandat 2686.326 kb on + strand, within AO353_12210at 2686.326 kb on + strand, within AO353_12210at 2686.326 kb on + strand, within AO353_12210at 2686.326 kb on + strand, within AO353_12210at 2686.326 kb on + strand, within AO353_12210at 2686.327 kb on - strand, within AO353_12210at 2686.327 kb on - strand, within AO353_12210at 2686.327 kb on - strand, within AO353_12210at 2686.327 kb on - strand, within AO353_12210at 2686.327 kb on - strand, within AO353_12210at 2686.455 kb on + strand, within AO353_12210at 2686.455 kb on + strand, within AO353_12210at 2686.455 kb on + strand, within AO353_12210at 2686.456 kb on - strand, within AO353_12210at 2686.456 kb on - strand, within AO353_12210at 2686.456 kb on - strand, within AO353_12210at 2686.456 kb on - strand, within AO353_12210at 2686.598 kb on + strand, within AO353_12210at 2686.598 kb on + strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.599 kb on - strand, within AO353_12210at 2686.719 kb on - strand, within AO353_12210at 2686.795 kb on + strandat 2686.795 kb on + strandat 2686.795 kb on + strandat 2686.841 kb on + strandat 2686.841 kb on + strandat 2686.841 kb on + strandat 2686.971 kb on + strandat 2686.971 kb on + strandat 2686.972 kb on - strandat 2686.972 kb on - strandat 2686.972 kb on - strandat 2686.972 kb on - strandat 2686.974 kb on + strandat 2686.974 kb on + strandat 2686.974 kb on + strandat 2686.974 kb on + strandat 2686.974 kb on + strandat 2686.975 kb on - strandat 2686.975 kb on - strandat 2686.975 kb on - strandat 2686.975 kb on - strandat 2686.975 kb on - strandat 2686.975 kb on - strandat 2686.987 kb on + strandat 2686.988 kb on - strandat 2686.988 kb on - strandat 2687.164 kb on + strand, within AO353_12215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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2,684,268 + AO353_12200 0.52 -0.2
2,684,269 - AO353_12200 0.52 -0.6
2,684,269 - AO353_12200 0.52 +0.2
2,684,269 - AO353_12200 0.52 -0.0
2,684,331 + AO353_12200 0.56 -0.9
2,684,331 + AO353_12200 0.56 +1.0
2,684,331 + AO353_12200 0.56 +0.8
2,684,331 + AO353_12200 0.56 -0.2
2,684,331 + AO353_12200 0.56 +1.9
2,684,604 + AO353_12200 0.76 -0.5
2,684,604 + AO353_12200 0.76 -0.6
2,684,604 + AO353_12200 0.76 -1.4
2,684,605 - AO353_12200 0.76 +1.3
2,684,655 + AO353_12200 0.80 +1.2
2,684,684 + AO353_12200 0.82 +1.3
2,684,685 - AO353_12200 0.82 +0.6
2,684,724 + AO353_12200 0.85 -1.4
2,684,725 - AO353_12200 0.85 -0.3
2,684,725 - AO353_12200 0.85 +1.0
2,684,995 - -0.7
2,685,003 + -0.1
2,685,003 + -0.8
2,685,003 + -1.0
2,685,003 + +1.3
2,685,009 + +0.4
2,685,009 + -0.2
2,685,010 - -0.0
2,685,023 - +0.8
2,685,023 - -0.4
2,685,023 - -2.6
2,685,095 + -0.9
2,685,095 + +0.4
2,685,095 + +0.5
2,685,095 + -0.2
2,685,095 + +0.4
2,685,095 + -0.8
2,685,095 + +0.9
2,685,095 + -0.8
2,685,095 + -1.7
2,685,111 + +0.2
2,685,111 + -0.5
2,685,111 + -1.8
2,685,112 - -0.2
2,685,136 + +1.4
2,685,136 + -0.2
2,685,136 + -0.0
2,685,157 + -1.7
2,685,157 + +0.6
2,685,157 + +0.1
2,686,235 + -2.1
2,686,236 - +1.1
2,686,236 - -2.1
2,686,236 - +0.5
2,686,326 + AO353_12210 0.14 -1.0
2,686,326 + AO353_12210 0.14 -1.3
2,686,326 + AO353_12210 0.14 +0.5
2,686,326 + AO353_12210 0.14 +0.8
2,686,326 + AO353_12210 0.14 -1.0
2,686,327 - AO353_12210 0.14 -0.1
2,686,327 - AO353_12210 0.14 -0.2
2,686,327 - AO353_12210 0.14 -0.3
2,686,327 - AO353_12210 0.14 -1.4
2,686,327 - AO353_12210 0.14 +0.6
2,686,455 + AO353_12210 0.35 -1.4
2,686,455 + AO353_12210 0.35 +0.1
2,686,455 + AO353_12210 0.35 -0.4
2,686,456 - AO353_12210 0.36 -0.3
2,686,456 - AO353_12210 0.36 -0.4
2,686,456 - AO353_12210 0.36 +2.1
2,686,456 - AO353_12210 0.36 -0.1
2,686,598 + AO353_12210 0.59 -1.2
2,686,598 + AO353_12210 0.59 +1.1
2,686,599 - AO353_12210 0.59 +0.7
2,686,599 - AO353_12210 0.59 -2.1
2,686,599 - AO353_12210 0.59 -0.2
2,686,599 - AO353_12210 0.59 +1.2
2,686,599 - AO353_12210 0.59 -1.2
2,686,599 - AO353_12210 0.59 +0.5
2,686,719 - AO353_12210 0.79 +0.1
2,686,795 + +0.6
2,686,795 + +0.7
2,686,795 + -1.7
2,686,841 + +0.6
2,686,841 + +0.6
2,686,841 + -1.3
2,686,971 + +1.1
2,686,971 + +1.3
2,686,972 - +3.3
2,686,972 - -0.5
2,686,972 - +0.0
2,686,972 - +2.0
2,686,974 + +0.3
2,686,974 + +0.2
2,686,974 + -2.4
2,686,974 + -1.3
2,686,974 + +1.7
2,686,975 - -1.0
2,686,975 - -0.4
2,686,975 - -0.7
2,686,975 - -0.3
2,686,975 - -0.2
2,686,975 - -1.2
2,686,987 + -0.6
2,686,988 - -0.8
2,686,988 - -0.5
2,687,164 + AO353_12215 0.10 +0.6

Or see this region's nucleotide sequence