Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07955

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07950 and AO353_07955 are separated by 190 nucleotidesAO353_07955 and AO353_07960 are separated by 273 nucleotides AO353_07950: AO353_07950 - glyceraldehyde-3-phosphate dehydrogenase, at 1,751,925 to 1,753,010 _07950 AO353_07955: AO353_07955 - transketolase, at 1,753,201 to 1,755,198 _07955 AO353_07960: AO353_07960 - ArsR family transcriptional regulator, at 1,755,472 to 1,756,467 _07960 Position (kb) 1753 1754 1755 1756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1752.470 kb on - strand, within AO353_07950at 1752.791 kb on + strand, within AO353_07950at 1752.992 kb on - strandat 1752.992 kb on - strandat 1753.102 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.187 kb on + strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.188 kb on - strandat 1753.202 kb on + strandat 1753.203 kb on - strandat 1753.203 kb on - strandat 1753.203 kb on - strandat 1753.203 kb on - strandat 1753.203 kb on - strandat 1755.297 kb on + strandat 1755.297 kb on + strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.298 kb on - strandat 1755.361 kb on + strandat 1755.362 kb on - strandat 1755.362 kb on - strandat 1755.362 kb on - strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.369 kb on + strandat 1755.370 kb on - strandat 1755.370 kb on - strandat 1755.370 kb on - strandat 1755.375 kb on + strandat 1755.375 kb on + strandat 1755.375 kb on + strandat 1755.376 kb on - strandat 1755.376 kb on - strandat 1755.376 kb on - strandat 1755.410 kb on + strandat 1755.410 kb on + strandat 1755.410 kb on + strandat 1755.411 kb on - strandat 1755.426 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.457 kb on + strandat 1755.458 kb on - strandat 1755.471 kb on + strandat 1755.479 kb on + strandat 1755.479 kb on + strandat 1755.479 kb on + strandat 1756.056 kb on + strand, within AO353_07960at 1756.148 kb on + strand, within AO353_07960at 1756.148 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960at 1756.172 kb on + strand, within AO353_07960

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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1,752,470 - AO353_07950 0.50 -0.3
1,752,791 + AO353_07950 0.80 -0.7
1,752,992 - +0.5
1,752,992 - -1.6
1,753,102 + -1.5
1,753,187 + +0.4
1,753,187 + +0.3
1,753,187 + -1.0
1,753,187 + -0.1
1,753,187 + -0.8
1,753,187 + -0.3
1,753,187 + -0.6
1,753,187 + +1.5
1,753,188 - +1.6
1,753,188 - -0.1
1,753,188 - -0.9
1,753,188 - -0.8
1,753,188 - -0.4
1,753,188 - +1.1
1,753,188 - -0.3
1,753,188 - -1.9
1,753,188 - +0.3
1,753,188 - -0.3
1,753,188 - -0.4
1,753,188 - +0.6
1,753,202 + -1.0
1,753,203 - +0.1
1,753,203 - +1.7
1,753,203 - -0.1
1,753,203 - -0.3
1,753,203 - -0.2
1,755,297 + +1.3
1,755,297 + -1.8
1,755,298 - -0.4
1,755,298 - +0.6
1,755,298 - -1.1
1,755,298 - +0.2
1,755,298 - -0.2
1,755,361 + +0.2
1,755,362 - -0.6
1,755,362 - -0.1
1,755,362 - -0.4
1,755,369 + -1.8
1,755,369 + -1.3
1,755,369 + -0.5
1,755,369 + -0.1
1,755,369 + +0.2
1,755,369 + -0.9
1,755,370 - -0.8
1,755,370 - -0.2
1,755,370 - +0.1
1,755,375 + -0.6
1,755,375 + -0.9
1,755,375 + -0.7
1,755,376 - +1.9
1,755,376 - +1.3
1,755,376 - -1.1
1,755,410 + -0.1
1,755,410 + -1.1
1,755,410 + -0.1
1,755,411 - -0.3
1,755,426 + +3.3
1,755,457 + -1.1
1,755,457 + +0.5
1,755,457 + +0.7
1,755,457 + -0.5
1,755,457 + +1.1
1,755,457 + -1.5
1,755,457 + -0.2
1,755,458 - -0.6
1,755,471 + +0.3
1,755,479 + +0.6
1,755,479 + +0.8
1,755,479 + +0.8
1,756,056 + AO353_07960 0.59 -1.8
1,756,148 + AO353_07960 0.68 -0.7
1,756,148 + AO353_07960 0.68 -0.4
1,756,172 + AO353_07960 0.70 +0.9
1,756,172 + AO353_07960 0.70 +0.2
1,756,172 + AO353_07960 0.70 +0.9
1,756,172 + AO353_07960 0.70 -1.5

Or see this region's nucleotide sequence