Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07950 and AO353_07955 are separated by 190 nucleotides AO353_07955 and AO353_07960 are separated by 273 nucleotides
AO353_07950: AO353_07950 - glyceraldehyde-3-phosphate dehydrogenase, at 1,751,925 to 1,753,010
_07950
AO353_07955: AO353_07955 - transketolase, at 1,753,201 to 1,755,198
_07955
AO353_07960: AO353_07960 - ArsR family transcriptional regulator, at 1,755,472 to 1,756,467
_07960
Position (kb)
1753
1754
1755
1756 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1752.470 kb on - strand, within AO353_07950 at 1752.791 kb on + strand, within AO353_07950 at 1752.992 kb on - strand at 1752.992 kb on - strand at 1753.102 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.187 kb on + strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.188 kb on - strand at 1753.202 kb on + strand at 1753.203 kb on - strand at 1753.203 kb on - strand at 1753.203 kb on - strand at 1753.203 kb on - strand at 1753.203 kb on - strand at 1755.297 kb on + strand at 1755.297 kb on + strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.298 kb on - strand at 1755.361 kb on + strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.362 kb on - strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.369 kb on + strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.370 kb on - strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.375 kb on + strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.376 kb on - strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.410 kb on + strand at 1755.411 kb on - strand at 1755.426 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.457 kb on + strand at 1755.458 kb on - strand at 1755.471 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1755.479 kb on + strand at 1756.056 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.148 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960 at 1756.172 kb on + strand, within AO353_07960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 1,752,470 - AO353_07950 0.50 -0.3 1,752,791 + AO353_07950 0.80 -0.7 1,752,992 - +0.5 1,752,992 - -1.6 1,753,102 + -1.5 1,753,187 + +0.4 1,753,187 + +0.3 1,753,187 + -1.0 1,753,187 + -0.1 1,753,187 + -0.8 1,753,187 + -0.3 1,753,187 + -0.6 1,753,187 + +1.5 1,753,188 - +1.6 1,753,188 - -0.1 1,753,188 - -0.9 1,753,188 - -0.8 1,753,188 - -0.4 1,753,188 - +1.1 1,753,188 - -0.3 1,753,188 - -1.9 1,753,188 - +0.3 1,753,188 - -0.3 1,753,188 - -0.4 1,753,188 - +0.6 1,753,202 + -1.0 1,753,203 - +0.1 1,753,203 - +1.7 1,753,203 - -0.1 1,753,203 - -0.3 1,753,203 - -0.2 1,755,297 + +1.3 1,755,297 + -1.8 1,755,298 - -0.4 1,755,298 - +0.6 1,755,298 - -1.1 1,755,298 - +0.2 1,755,298 - -0.2 1,755,361 + +0.2 1,755,362 - -0.6 1,755,362 - -0.1 1,755,362 - -0.4 1,755,369 + -1.8 1,755,369 + -1.3 1,755,369 + -0.5 1,755,369 + -0.1 1,755,369 + +0.2 1,755,369 + -0.9 1,755,370 - -0.8 1,755,370 - -0.2 1,755,370 - +0.1 1,755,375 + -0.6 1,755,375 + -0.9 1,755,375 + -0.7 1,755,376 - +1.9 1,755,376 - +1.3 1,755,376 - -1.1 1,755,410 + -0.1 1,755,410 + -1.1 1,755,410 + -0.1 1,755,411 - -0.3 1,755,426 + +3.3 1,755,457 + -1.1 1,755,457 + +0.5 1,755,457 + +0.7 1,755,457 + -0.5 1,755,457 + +1.1 1,755,457 + -1.5 1,755,457 + -0.2 1,755,458 - -0.6 1,755,471 + +0.3 1,755,479 + +0.6 1,755,479 + +0.8 1,755,479 + +0.8 1,756,056 + AO353_07960 0.59 -1.8 1,756,148 + AO353_07960 0.68 -0.7 1,756,148 + AO353_07960 0.68 -0.4 1,756,172 + AO353_07960 0.70 +0.9 1,756,172 + AO353_07960 0.70 +0.2 1,756,172 + AO353_07960 0.70 +0.9 1,756,172 + AO353_07960 0.70 -1.5
Or see this region's nucleotide sequence