Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03780

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03775 and AO353_03780 are separated by 135 nucleotidesAO353_03780 and AO353_03785 are separated by 28 nucleotidesAO353_03785 and AO353_03790 overlap by 8 nucleotides AO353_03775: AO353_03775 - pyruvate kinase, at 805,639 to 807,090 _03775 AO353_03780: AO353_03780 - enoyl-CoA hydratase, at 807,226 to 807,975 _03780 AO353_03785: AO353_03785 - hypothetical protein, at 808,004 to 808,939 _03785 AO353_03790: AO353_03790 - hypothetical protein, at 808,932 to 810,038 _03790 Position (kb) 807 808Strain fitness (log2 ratio) -2 -1 0 1 2 3at 806.248 kb on + strand, within AO353_03775at 806.248 kb on + strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.425 kb on - strand, within AO353_03775at 806.463 kb on + strand, within AO353_03775at 806.463 kb on + strand, within AO353_03775at 806.464 kb on - strand, within AO353_03775at 806.555 kb on + strand, within AO353_03775at 806.563 kb on + strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.846 kb on - strand, within AO353_03775at 806.902 kb on + strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.909 kb on + strand, within AO353_03775at 806.910 kb on - strand, within AO353_03775at 807.028 kb on + strandat 807.028 kb on + strandat 807.029 kb on - strandat 807.029 kb on - strandat 807.029 kb on - strandat 807.093 kb on - strandat 807.155 kb on + strandat 807.155 kb on + strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.240 kb on + strandat 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strandat 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.643 kb on + strand, within AO353_03780at 807.643 kb on + strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.796 kb on - strand, within AO353_03780at 807.823 kb on + strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.856 kb on + strand, within AO353_03780at 807.856 kb on + strand, within AO353_03780at 807.857 kb on - strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 808.062 kb on + strandat 808.062 kb on + strandat 808.062 kb on + strandat 808.063 kb on - strandat 808.063 kb on - strandat 808.109 kb on + strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.110 kb on - strand, within AO353_03785at 808.189 kb on + strand, within AO353_03785at 808.189 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.236 kb on + strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.237 kb on - strand, within AO353_03785at 808.269 kb on - strand, within AO353_03785at 808.386 kb on + strand, within AO353_03785at 808.386 kb on + strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.387 kb on - strand, within AO353_03785at 808.534 kb on - strand, within AO353_03785at 808.584 kb on + strand, within AO353_03785at 808.689 kb on - strand, within AO353_03785at 808.694 kb on + strand, within AO353_03785at 808.694 kb on + strand, within AO353_03785at 808.695 kb on - strand, within AO353_03785at 808.845 kb on + strand, within AO353_03785at 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.928 kb on + strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strandat 808.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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806,248 + AO353_03775 0.42 +0.2
806,248 + AO353_03775 0.42 -0.0
806,249 - AO353_03775 0.42 +1.1
806,249 - AO353_03775 0.42 -0.3
806,249 - AO353_03775 0.42 +1.5
806,249 - AO353_03775 0.42 +0.7
806,249 - AO353_03775 0.42 -0.6
806,249 - AO353_03775 0.42 -1.9
806,249 - AO353_03775 0.42 +1.6
806,425 - AO353_03775 0.54 +0.5
806,463 + AO353_03775 0.57 -0.7
806,463 + AO353_03775 0.57 +0.3
806,464 - AO353_03775 0.57 +2.6
806,555 + AO353_03775 0.63 -1.6
806,563 + AO353_03775 0.64 -0.2
806,564 - AO353_03775 0.64 -0.6
806,564 - AO353_03775 0.64 +0.7
806,564 - AO353_03775 0.64 +0.5
806,743 + AO353_03775 0.76 -0.9
806,743 + AO353_03775 0.76 -1.6
806,743 + AO353_03775 0.76 -1.2
806,743 + AO353_03775 0.76 -1.5
806,743 + AO353_03775 0.76 +1.2
806,743 + AO353_03775 0.76 +0.7
806,743 + AO353_03775 0.76 +0.8
806,744 - AO353_03775 0.76 -0.6
806,744 - AO353_03775 0.76 -0.0
806,744 - AO353_03775 0.76 -0.5
806,744 - AO353_03775 0.76 -1.9
806,744 - AO353_03775 0.76 -1.8
806,744 - AO353_03775 0.76 -0.3
806,744 - AO353_03775 0.76 -0.0
806,846 - AO353_03775 0.83 -1.3
806,902 + AO353_03775 0.87 -2.3
806,903 - AO353_03775 0.87 -0.5
806,903 - AO353_03775 0.87 +1.8
806,903 - AO353_03775 0.87 +0.2
806,903 - AO353_03775 0.87 -1.5
806,903 - AO353_03775 0.87 +2.0
806,903 - AO353_03775 0.87 -0.0
806,903 - AO353_03775 0.87 -0.0
806,903 - AO353_03775 0.87 -0.1
806,909 + AO353_03775 0.87 -0.2
806,910 - AO353_03775 0.88 -0.0
807,028 + +0.4
807,028 + +1.2
807,029 - -0.1
807,029 - -1.2
807,029 - -1.5
807,093 - -0.2
807,155 + +0.3
807,155 + -1.3
807,156 - -1.9
807,156 - -0.8
807,156 - +1.0
807,156 - +1.2
807,240 + -0.5
807,623 + AO353_03780 0.53 +2.0
807,623 + +0.7
807,623 + AO353_03780 0.53 +0.1
807,623 + AO353_03780 0.53 +1.1
807,623 + AO353_03780 0.53 -0.2
807,623 + AO353_03780 0.53 +1.2
807,624 - AO353_03780 0.53 -0.3
807,624 - AO353_03780 0.53 -0.6
807,624 - AO353_03780 0.53 +1.0
807,624 - AO353_03780 0.53 -1.3
807,624 - AO353_03780 0.53 +1.2
807,624 - AO353_03780 0.53 -0.1
807,624 - AO353_03780 0.53 -0.4
807,643 + AO353_03780 0.56 -0.5
807,643 + AO353_03780 0.56 +0.8
807,644 - AO353_03780 0.56 -0.7
807,644 - AO353_03780 0.56 -0.3
807,644 - AO353_03780 0.56 -1.8
807,796 - AO353_03780 0.76 -0.2
807,823 + AO353_03780 0.80 -0.1
807,824 - AO353_03780 0.80 +1.1
807,824 - AO353_03780 0.80 +0.3
807,824 - AO353_03780 0.80 +0.1
807,824 - AO353_03780 0.80 +0.2
807,856 + AO353_03780 0.84 -1.5
807,856 + AO353_03780 0.84 -2.5
807,857 - AO353_03780 0.84 -1.9
807,881 + AO353_03780 0.87 +0.7
807,881 + AO353_03780 0.87 +0.1
807,881 + AO353_03780 0.87 -1.3
807,882 - AO353_03780 0.87 -0.6
807,882 - AO353_03780 0.87 +0.4
807,882 - AO353_03780 0.87 -1.2
807,882 - AO353_03780 0.87 -2.7
807,882 - AO353_03780 0.87 -0.7
807,882 - AO353_03780 0.87 +0.5
807,882 - AO353_03780 0.87 +0.3
808,062 + +0.9
808,062 + +0.7
808,062 + +1.1
808,063 - +0.1
808,063 - -0.1
808,109 + AO353_03785 0.11 +0.1
808,110 - AO353_03785 0.11 -1.2
808,110 - AO353_03785 0.11 -0.0
808,110 - AO353_03785 0.11 +0.7
808,110 - AO353_03785 0.11 -0.5
808,110 - AO353_03785 0.11 +0.0
808,110 - AO353_03785 0.11 -0.5
808,189 + AO353_03785 0.20 -1.1
808,189 + AO353_03785 0.20 -0.5
808,236 + AO353_03785 0.25 -0.2
808,236 + AO353_03785 0.25 +0.8
808,236 + AO353_03785 0.25 -1.3
808,236 + AO353_03785 0.25 -0.2
808,237 - AO353_03785 0.25 -0.2
808,237 - AO353_03785 0.25 -0.4
808,237 - AO353_03785 0.25 -0.8
808,237 - AO353_03785 0.25 -0.9
808,237 - AO353_03785 0.25 -0.6
808,237 - AO353_03785 0.25 +0.8
808,269 - AO353_03785 0.28 +0.1
808,386 + AO353_03785 0.41 +1.1
808,386 + AO353_03785 0.41 -1.3
808,387 - AO353_03785 0.41 +2.0
808,387 - AO353_03785 0.41 +0.6
808,387 - AO353_03785 0.41 -0.6
808,387 - AO353_03785 0.41 -0.3
808,387 - AO353_03785 0.41 -0.7
808,387 - AO353_03785 0.41 -0.5
808,534 - AO353_03785 0.57 +0.1
808,584 + AO353_03785 0.62 +0.3
808,689 - AO353_03785 0.73 +1.4
808,694 + AO353_03785 0.74 -1.1
808,694 + AO353_03785 0.74 +0.8
808,695 - AO353_03785 0.74 +0.5
808,845 + AO353_03785 0.90 -1.0
808,928 + +0.3
808,928 + +0.5
808,928 + -1.4
808,928 + -0.7
808,928 + -0.5
808,928 + +0.2
808,928 + -0.3
808,928 + +3.0
808,928 + -0.7
808,929 - +0.2
808,929 - -0.4
808,929 - +1.2
808,929 - -0.3
808,929 - +1.4
808,929 - -2.0
808,929 - +0.1
808,929 - +1.2

Or see this region's nucleotide sequence