Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02215

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02205 and AO353_02210 are separated by 241 nucleotidesAO353_02210 and AO353_02215 are separated by 97 nucleotidesAO353_02215 and AO353_02220 are separated by 404 nucleotidesAO353_02220 and AO353_02225 are separated by 67 nucleotides AO353_02205: AO353_02205 - hypothetical protein, at 473,385 to 473,915 _02205 AO353_02210: AO353_02210 - hypothetical protein, at 474,157 to 474,675 _02210 AO353_02215: AO353_02215 - long-chain acyl-CoA synthetase, at 474,773 to 476,611 _02215 AO353_02220: AO353_02220 - hypothetical protein, at 477,016 to 477,294 _02220 AO353_02225: AO353_02225 - LuxR family transcriptional regulator, at 477,362 to 477,595 _02225 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 473.773 kb on + strand, within AO353_02205at 473.773 kb on + strand, within AO353_02205at 473.774 kb on - strand, within AO353_02205at 473.774 kb on - strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.818 kb on + strand, within AO353_02205at 473.819 kb on - strand, within AO353_02205at 474.057 kb on + strandat 474.076 kb on + strandat 474.076 kb on + strandat 474.076 kb on + strandat 474.077 kb on - strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.083 kb on + strandat 474.084 kb on - strandat 474.084 kb on - strandat 474.084 kb on - strandat 474.278 kb on + strand, within AO353_02210at 474.279 kb on - strand, within AO353_02210at 474.710 kb on + strandat 474.710 kb on + strandat 474.710 kb on + strandat 474.809 kb on + strandat 474.809 kb on + strandat 474.810 kb on - strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.831 kb on + strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.832 kb on - strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.858 kb on + strandat 474.859 kb on - strandat 474.859 kb on - strandat 474.859 kb on - strandat 474.859 kb on - strandat 474.922 kb on - strandat 474.981 kb on + strand, within AO353_02215at 474.981 kb on + strand, within AO353_02215at 474.982 kb on - strand, within AO353_02215at 474.982 kb on - strand, within AO353_02215at 475.104 kb on + strand, within AO353_02215at 475.104 kb on + strand, within AO353_02215at 475.188 kb on + strand, within AO353_02215at 475.189 kb on - strand, within AO353_02215at 475.192 kb on + strand, within AO353_02215at 475.193 kb on - strand, within AO353_02215at 475.193 kb on - strand, within AO353_02215at 475.193 kb on - strand, within AO353_02215at 475.255 kb on + strand, within AO353_02215at 475.256 kb on - strand, within AO353_02215at 475.264 kb on - strand, within AO353_02215at 475.443 kb on + strand, within AO353_02215at 475.444 kb on - strand, within AO353_02215at 475.517 kb on - strand, within AO353_02215at 475.669 kb on - strand, within AO353_02215at 475.690 kb on - strand, within AO353_02215at 475.711 kb on - strand, within AO353_02215at 475.821 kb on + strand, within AO353_02215at 475.821 kb on + strand, within AO353_02215at 475.821 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.839 kb on + strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.840 kb on - strand, within AO353_02215at 475.861 kb on + strand, within AO353_02215at 475.862 kb on - strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.956 kb on + strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.957 kb on - strand, within AO353_02215at 475.960 kb on + strand, within AO353_02215at 475.960 kb on + strand, within AO353_02215at 475.960 kb on + strand, within AO353_02215at 475.961 kb on - strand, within AO353_02215at 475.961 kb on - strand, within AO353_02215at 475.961 kb on - strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.962 kb on + strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.963 kb on - strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.983 kb on + strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.984 kb on - strand, within AO353_02215at 475.985 kb on + strand, within AO353_02215at 475.985 kb on + strand, within AO353_02215at 475.985 kb on + strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 475.986 kb on - strand, within AO353_02215at 476.236 kb on + strand, within AO353_02215at 476.236 kb on + strand, within AO353_02215at 476.236 kb on + strand, within AO353_02215at 476.236 kb on + strand, within AO353_02215at 476.237 kb on - strand, within AO353_02215at 476.359 kb on - strand, within AO353_02215at 476.359 kb on - strand, within AO353_02215at 476.397 kb on + strand, within AO353_02215at 476.398 kb on - strand, within AO353_02215at 476.398 kb on - strand, within AO353_02215at 476.398 kb on - strand, within AO353_02215at 476.398 kb on - strand, within AO353_02215at 476.443 kb on + strandat 476.563 kb on + strandat 476.563 kb on + strandat 476.564 kb on - strandat 476.564 kb on - strandat 476.564 kb on - strandat 476.652 kb on + strandat 476.680 kb on + strandat 476.681 kb on - strandat 476.681 kb on - strandat 476.719 kb on - strandat 476.735 kb on + strandat 476.736 kb on - strandat 476.736 kb on - strandat 476.773 kb on + strandat 476.795 kb on + strandat 476.795 kb on + strandat 476.795 kb on + strandat 476.971 kb on + strandat 477.112 kb on - strand, within AO353_02220at 477.148 kb on + strand, within AO353_02220at 477.280 kb on + strandat 477.280 kb on + strandat 477.280 kb on + strandat 477.281 kb on - strandat 477.281 kb on - strandat 477.281 kb on - strandat 477.292 kb on + strandat 477.292 kb on + strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.293 kb on - strandat 477.432 kb on + strand, within AO353_02225at 477.432 kb on + strand, within AO353_02225at 477.432 kb on + strand, within AO353_02225at 477.432 kb on + strand, within AO353_02225at 477.432 kb on + strand, within AO353_02225at 477.433 kb on - strand, within AO353_02225at 477.433 kb on - strand, within AO353_02225at 477.433 kb on - strand, within AO353_02225at 477.433 kb on - strand, within AO353_02225at 477.433 kb on - strand, within AO353_02225at 477.522 kb on + strand, within AO353_02225at 477.523 kb on - strand, within AO353_02225at 477.599 kb on + strandat 477.599 kb on + strandat 477.599 kb on + strandat 477.599 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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473,773 + AO353_02205 0.73 +0.5
473,773 + AO353_02205 0.73 -1.1
473,774 - AO353_02205 0.73 +0.7
473,774 - AO353_02205 0.73 -0.5
473,818 + AO353_02205 0.82 +0.0
473,818 + AO353_02205 0.82 -1.5
473,818 + AO353_02205 0.82 -0.9
473,819 - AO353_02205 0.82 +1.1
474,057 + -0.6
474,076 + +0.2
474,076 + -0.5
474,076 + +1.4
474,077 - -1.0
474,083 + -0.1
474,083 + -0.6
474,083 + +0.7
474,083 + -0.6
474,083 + -1.1
474,084 - -1.5
474,084 - -1.3
474,084 - -0.3
474,278 + AO353_02210 0.23 +0.8
474,279 - AO353_02210 0.24 +0.1
474,710 + -1.0
474,710 + +0.3
474,710 + +0.0
474,809 + -0.9
474,809 + +0.6
474,810 - -0.7
474,831 + +1.0
474,831 + +1.5
474,831 + -0.6
474,831 + -0.2
474,831 + -1.3
474,831 + +1.0
474,831 + -0.6
474,831 + -1.2
474,831 + +0.2
474,831 + -0.8
474,831 + -2.5
474,831 + +1.5
474,831 + +1.6
474,831 + -0.3
474,831 + -0.8
474,831 + +0.0
474,832 - +0.6
474,832 - -0.2
474,832 - -0.2
474,832 - +0.6
474,832 - +1.0
474,832 - -0.0
474,832 - -1.3
474,832 - -0.4
474,832 - -0.2
474,832 - +1.5
474,832 - -0.6
474,832 - -1.3
474,832 - +0.8
474,832 - -2.0
474,832 - +1.0
474,832 - -0.8
474,832 - -0.4
474,832 - -0.3
474,832 - +0.1
474,832 - -0.1
474,832 - +0.3
474,832 - +0.1
474,832 - +0.4
474,858 + -0.2
474,858 + +0.1
474,858 + +0.1
474,858 + +1.4
474,858 + -0.1
474,858 + +0.2
474,858 + +0.4
474,858 + +0.6
474,859 - +0.1
474,859 - +1.2
474,859 - -0.0
474,859 - +0.4
474,922 - -0.3
474,981 + AO353_02215 0.11 +0.2
474,981 + AO353_02215 0.11 +1.0
474,982 - AO353_02215 0.11 -0.3
474,982 - AO353_02215 0.11 -0.6
475,104 + AO353_02215 0.18 -0.9
475,104 + AO353_02215 0.18 -0.9
475,188 + AO353_02215 0.23 -2.2
475,189 - AO353_02215 0.23 -0.3
475,192 + AO353_02215 0.23 -0.1
475,193 - AO353_02215 0.23 -0.9
475,193 - AO353_02215 0.23 +1.8
475,193 - AO353_02215 0.23 +0.8
475,255 + AO353_02215 0.26 +0.1
475,256 - AO353_02215 0.26 -1.0
475,264 - AO353_02215 0.27 +1.4
475,443 + AO353_02215 0.36 -1.1
475,444 - AO353_02215 0.36 -0.5
475,517 - AO353_02215 0.40 +0.7
475,669 - AO353_02215 0.49 +0.0
475,690 - AO353_02215 0.50 -0.1
475,711 - AO353_02215 0.51 -0.7
475,821 + AO353_02215 0.57 -1.3
475,821 + AO353_02215 0.57 -0.6
475,821 + AO353_02215 0.57 -0.5
475,839 + AO353_02215 0.58 -2.8
475,839 + AO353_02215 0.58 -1.5
475,839 + AO353_02215 0.58 -0.8
475,839 + AO353_02215 0.58 +0.4
475,839 + AO353_02215 0.58 -1.0
475,839 + AO353_02215 0.58 +0.5
475,839 + AO353_02215 0.58 +0.3
475,839 + AO353_02215 0.58 -1.5
475,839 + AO353_02215 0.58 +1.8
475,840 - AO353_02215 0.58 -0.1
475,840 - AO353_02215 0.58 -1.3
475,840 - AO353_02215 0.58 +0.8
475,840 - AO353_02215 0.58 +0.2
475,840 - AO353_02215 0.58 -0.1
475,840 - AO353_02215 0.58 +1.4
475,840 - AO353_02215 0.58 -1.8
475,840 - AO353_02215 0.58 +0.0
475,840 - AO353_02215 0.58 -1.6
475,840 - AO353_02215 0.58 +0.1
475,840 - AO353_02215 0.58 -1.0
475,861 + AO353_02215 0.59 -0.3
475,862 - AO353_02215 0.59 -1.3
475,956 + AO353_02215 0.64 -1.1
475,956 + AO353_02215 0.64 -0.9
475,956 + AO353_02215 0.64 +1.1
475,956 + AO353_02215 0.64 +2.1
475,956 + AO353_02215 0.64 -1.0
475,956 + AO353_02215 0.64 -1.1
475,956 + AO353_02215 0.64 +0.7
475,956 + AO353_02215 0.64 +1.7
475,956 + AO353_02215 0.64 -0.2
475,956 + AO353_02215 0.64 +0.8
475,956 + AO353_02215 0.64 +0.7
475,956 + AO353_02215 0.64 -0.2
475,956 + AO353_02215 0.64 +0.8
475,956 + AO353_02215 0.64 -0.4
475,956 + AO353_02215 0.64 +0.2
475,957 - AO353_02215 0.64 -0.6
475,957 - AO353_02215 0.64 +1.2
475,957 - AO353_02215 0.64 +0.9
475,957 - AO353_02215 0.64 -0.9
475,957 - AO353_02215 0.64 -0.5
475,957 - AO353_02215 0.64 +1.6
475,957 - AO353_02215 0.64 -0.0
475,957 - AO353_02215 0.64 +3.8
475,957 - AO353_02215 0.64 +0.9
475,957 - AO353_02215 0.64 +0.5
475,957 - AO353_02215 0.64 +1.4
475,957 - AO353_02215 0.64 -0.3
475,957 - AO353_02215 0.64 +0.1
475,957 - AO353_02215 0.64 +1.2
475,960 + AO353_02215 0.65 -0.3
475,960 + AO353_02215 0.65 +0.4
475,960 + AO353_02215 0.65 -1.0
475,961 - AO353_02215 0.65 -0.9
475,961 - AO353_02215 0.65 +1.0
475,961 - AO353_02215 0.65 -0.7
475,962 + AO353_02215 0.65 -0.3
475,962 + AO353_02215 0.65 +0.2
475,962 + AO353_02215 0.65 -0.2
475,962 + AO353_02215 0.65 +0.9
475,962 + AO353_02215 0.65 +0.4
475,962 + AO353_02215 0.65 +0.4
475,962 + AO353_02215 0.65 +1.1
475,962 + AO353_02215 0.65 +0.2
475,962 + AO353_02215 0.65 -0.3
475,962 + AO353_02215 0.65 +1.0
475,962 + AO353_02215 0.65 +1.2
475,962 + AO353_02215 0.65 +2.0
475,962 + AO353_02215 0.65 +0.0
475,962 + AO353_02215 0.65 -0.1
475,962 + AO353_02215 0.65 +0.7
475,962 + AO353_02215 0.65 +0.2
475,962 + AO353_02215 0.65 +0.2
475,963 - AO353_02215 0.65 -0.5
475,963 - AO353_02215 0.65 +1.2
475,963 - AO353_02215 0.65 -1.6
475,963 - AO353_02215 0.65 +0.3
475,963 - AO353_02215 0.65 -0.8
475,963 - AO353_02215 0.65 -0.7
475,963 - AO353_02215 0.65 +0.5
475,963 - AO353_02215 0.65 +0.3
475,963 - AO353_02215 0.65 -0.4
475,963 - AO353_02215 0.65 +2.0
475,963 - AO353_02215 0.65 -1.3
475,963 - AO353_02215 0.65 +0.8
475,963 - AO353_02215 0.65 -1.4
475,963 - AO353_02215 0.65 +0.7
475,983 + AO353_02215 0.66 -0.3
475,983 + AO353_02215 0.66 -0.6
475,983 + AO353_02215 0.66 -0.6
475,983 + AO353_02215 0.66 -0.9
475,983 + AO353_02215 0.66 -0.2
475,983 + AO353_02215 0.66 +1.3
475,983 + AO353_02215 0.66 -1.3
475,984 - AO353_02215 0.66 +0.0
475,984 - AO353_02215 0.66 -0.8
475,984 - AO353_02215 0.66 -1.4
475,984 - AO353_02215 0.66 -0.6
475,984 - AO353_02215 0.66 -0.8
475,984 - AO353_02215 0.66 -0.5
475,984 - AO353_02215 0.66 +1.8
475,984 - AO353_02215 0.66 -0.6
475,985 + AO353_02215 0.66 -1.3
475,985 + AO353_02215 0.66 +0.4
475,985 + AO353_02215 0.66 -0.8
475,986 - AO353_02215 0.66 +0.2
475,986 - AO353_02215 0.66 +0.2
475,986 - AO353_02215 0.66 -0.4
475,986 - AO353_02215 0.66 +0.2
475,986 - AO353_02215 0.66 -1.1
475,986 - AO353_02215 0.66 -0.8
476,236 + AO353_02215 0.80 +0.0
476,236 + AO353_02215 0.80 -1.2
476,236 + AO353_02215 0.80 -0.9
476,236 + AO353_02215 0.80 +1.2
476,237 - AO353_02215 0.80 -0.0
476,359 - AO353_02215 0.86 +0.4
476,359 - AO353_02215 0.86 -0.2
476,397 + AO353_02215 0.88 -0.0
476,398 - AO353_02215 0.88 -0.8
476,398 - AO353_02215 0.88 -0.5
476,398 - AO353_02215 0.88 -0.2
476,398 - AO353_02215 0.88 +0.1
476,443 + -0.6
476,563 + +1.5
476,563 + +3.8
476,564 - -1.3
476,564 - -1.9
476,564 - -0.1
476,652 + -1.3
476,680 + +0.3
476,681 - +1.0
476,681 - +0.5
476,719 - +0.8
476,735 + -0.7
476,736 - +0.0
476,736 - -0.4
476,773 + -0.7
476,795 + +1.0
476,795 + +0.4
476,795 + +0.3
476,971 + +0.0
477,112 - AO353_02220 0.34 -0.6
477,148 + AO353_02220 0.47 -0.1
477,280 + +1.8
477,280 + -1.1
477,280 + +0.3
477,281 - +0.7
477,281 - +0.7
477,281 - -0.3
477,292 + -0.9
477,292 + -0.3
477,293 - +0.0
477,293 - -1.3
477,293 - -1.0
477,293 - -0.9
477,293 - +0.5
477,293 - +1.3
477,293 - +1.0
477,293 - -0.9
477,432 + AO353_02225 0.30 +0.2
477,432 + AO353_02225 0.30 -1.5
477,432 + AO353_02225 0.30 -1.6
477,432 + AO353_02225 0.30 +0.3
477,432 + AO353_02225 0.30 -0.1
477,433 - AO353_02225 0.30 +0.7
477,433 - AO353_02225 0.30 -0.6
477,433 - AO353_02225 0.30 +0.0
477,433 - AO353_02225 0.30 -0.7
477,433 - AO353_02225 0.30 -0.3
477,522 + AO353_02225 0.68 -1.2
477,523 - AO353_02225 0.69 -0.8
477,599 + +0.1
477,599 + -1.0
477,599 + +0.8
477,599 + -0.2

Or see this region's nucleotide sequence