Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00880

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00870 and AO353_00875 are separated by 14 nucleotidesAO353_00875 and AO353_00880 are separated by 20 nucleotidesAO353_00880 and AO353_00885 are separated by 104 nucleotides AO353_00870: AO353_00870 - hypothetical protein, at 197,468 to 197,671 _00870 AO353_00875: AO353_00875 - transcriptional regulator, at 197,686 to 198,504 _00875 AO353_00880: AO353_00880 - 2-methylcitrate dehydratase, at 198,525 to 200,009 _00880 AO353_00885: AO353_00885 - 3-methylitaconate isomerase, at 200,114 to 201,304 _00885 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.525 kb on - strand, within AO353_00870at 197.581 kb on + strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.601 kb on + strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.642 kb on + strand, within AO353_00870at 197.642 kb on + strandat 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.648 kb on - strand, within AO353_00870at 197.669 kb on + strandat 197.707 kb on - strandat 197.707 kb on - strandat 197.727 kb on + strandat 197.728 kb on - strandat 197.728 kb on - strandat 197.775 kb on + strand, within AO353_00875at 197.792 kb on + strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.907 kb on + strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 198.004 kb on + strand, within AO353_00875at 198.005 kb on - strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.109 kb on + strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.112 kb on + strand, within AO353_00875at 198.113 kb on - strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.359 kb on - strand, within AO353_00875at 198.502 kb on + strandat 198.502 kb on + strandat 198.793 kb on + strand, within AO353_00880at 198.806 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.884 kb on - strand, within AO353_00880at 198.931 kb on + strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.932 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 198.990 kb on - strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.144 kb on + strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.145 kb on - strand, within AO353_00880at 199.153 kb on + strand, within AO353_00880at 199.153 kb on + strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.176 kb on - strand, within AO353_00880at 199.234 kb on + strand, within AO353_00880at 199.234 kb on + strand, within AO353_00880at 199.235 kb on - strand, within AO353_00880at 199.235 kb on - strandat 199.375 kb on + strand, within AO353_00880at 199.376 kb on - strand, within AO353_00880at 199.705 kb on + strand, within AO353_00880at 199.705 kb on + strand, within AO353_00880at 199.705 kb on + strand, within AO353_00880at 199.706 kb on - strand, within AO353_00880at 199.706 kb on - strand, within AO353_00880at 199.725 kb on - strand, within AO353_00880at 199.817 kb on + strand, within AO353_00880at 199.942 kb on + strandat 199.942 kb on + strandat 199.942 kb on + strandat 199.942 kb on + strandat 199.942 kb on + strandat 199.943 kb on - strandat 199.943 kb on - strandat 199.972 kb on + strandat 199.973 kb on - strandat 200.156 kb on + strandat 200.156 kb on + strandat 200.157 kb on - strandat 200.394 kb on - strand, within AO353_00885at 200.394 kb on - strand, within AO353_00885at 200.394 kb on - strand, within AO353_00885at 200.443 kb on - strandat 200.538 kb on + strand, within AO353_00885at 200.539 kb on - strand, within AO353_00885at 200.921 kb on - strand, within AO353_00885at 200.999 kb on - strand, within AO353_00885at 200.999 kb on - strand, within AO353_00885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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197,525 - AO353_00870 0.28 -1.0
197,581 + AO353_00870 0.55 -0.8
197,582 - AO353_00870 0.56 +0.7
197,582 - AO353_00870 0.56 -0.6
197,601 + AO353_00870 0.65 -1.4
197,602 - AO353_00870 0.66 -0.7
197,602 - AO353_00870 0.66 +1.3
197,642 + AO353_00870 0.85 -1.4
197,642 + +0.4
197,643 - AO353_00870 0.86 -0.8
197,643 - AO353_00870 0.86 -0.9
197,643 - AO353_00870 0.86 +0.4
197,648 - AO353_00870 0.88 -0.6
197,669 + +0.7
197,707 - -0.7
197,707 - +0.2
197,727 + -0.5
197,728 - -0.3
197,728 - -1.6
197,775 + AO353_00875 0.11 +0.6
197,792 + AO353_00875 0.13 -0.3
197,793 - AO353_00875 0.13 +0.2
197,793 - AO353_00875 0.13 -0.1
197,793 - AO353_00875 0.13 -1.1
197,800 + AO353_00875 0.14 -0.2
197,800 + AO353_00875 0.14 +0.6
197,801 - AO353_00875 0.14 -1.0
197,801 - AO353_00875 0.14 -1.3
197,834 + AO353_00875 0.18 -0.4
197,834 + AO353_00875 0.18 -1.4
197,834 + AO353_00875 0.18 -2.0
197,834 + AO353_00875 0.18 -0.3
197,834 + AO353_00875 0.18 +0.2
197,834 + AO353_00875 0.18 +0.3
197,834 + AO353_00875 0.18 +0.3
197,835 - AO353_00875 0.18 -0.3
197,835 - AO353_00875 0.18 -0.6
197,835 - AO353_00875 0.18 -1.3
197,835 - AO353_00875 0.18 -2.2
197,907 + AO353_00875 0.27 -1.0
197,908 - AO353_00875 0.27 -0.4
197,908 - AO353_00875 0.27 -0.3
198,004 + AO353_00875 0.39 -0.7
198,005 - AO353_00875 0.39 -1.4
198,046 + AO353_00875 0.44 -0.8
198,046 + AO353_00875 0.44 -0.8
198,046 + AO353_00875 0.44 -0.2
198,046 + AO353_00875 0.44 -1.3
198,046 + AO353_00875 0.44 -0.4
198,046 + AO353_00875 0.44 +0.2
198,046 + AO353_00875 0.44 -0.3
198,046 + AO353_00875 0.44 -1.4
198,046 + AO353_00875 0.44 -0.6
198,046 + AO353_00875 0.44 -1.0
198,047 - AO353_00875 0.44 -2.4
198,047 - AO353_00875 0.44 -0.5
198,047 - AO353_00875 0.44 -1.6
198,047 - AO353_00875 0.44 -1.2
198,047 - AO353_00875 0.44 -0.8
198,047 - AO353_00875 0.44 -0.4
198,109 + AO353_00875 0.52 +0.1
198,110 - AO353_00875 0.52 +0.8
198,110 - AO353_00875 0.52 -0.8
198,112 + AO353_00875 0.52 -1.7
198,113 - AO353_00875 0.52 -1.1
198,175 + AO353_00875 0.60 +0.1
198,175 + AO353_00875 0.60 +0.9
198,175 + AO353_00875 0.60 -1.0
198,175 + AO353_00875 0.60 +0.4
198,176 - AO353_00875 0.60 -1.2
198,176 - AO353_00875 0.60 -0.8
198,358 + AO353_00875 0.82 -0.3
198,358 + AO353_00875 0.82 -1.8
198,359 - AO353_00875 0.82 -1.8
198,502 + +0.1
198,502 + +1.2
198,793 + AO353_00880 0.18 +0.0
198,806 - AO353_00880 0.19 +0.9
198,884 - AO353_00880 0.24 -1.1
198,884 - AO353_00880 0.24 +0.2
198,884 - AO353_00880 0.24 +0.4
198,884 - AO353_00880 0.24 +0.7
198,931 + AO353_00880 0.27 -0.4
198,932 - AO353_00880 0.27 -1.7
198,932 - AO353_00880 0.27 -0.8
198,932 - AO353_00880 0.27 +0.7
198,990 - AO353_00880 0.31 -1.3
198,990 - AO353_00880 0.31 +1.2
198,990 - AO353_00880 0.31 +1.0
199,144 + AO353_00880 0.42 +0.0
199,144 + AO353_00880 0.42 -0.4
199,144 + AO353_00880 0.42 -0.3
199,144 + AO353_00880 0.42 +0.2
199,144 + AO353_00880 0.42 +0.7
199,144 + AO353_00880 0.42 -1.8
199,144 + AO353_00880 0.42 +2.3
199,145 - AO353_00880 0.42 -0.9
199,145 - AO353_00880 0.42 -0.6
199,145 - AO353_00880 0.42 +0.3
199,145 - AO353_00880 0.42 +0.7
199,145 - AO353_00880 0.42 +1.4
199,145 - AO353_00880 0.42 +0.0
199,145 - AO353_00880 0.42 +0.7
199,153 + AO353_00880 0.42 -1.1
199,153 + AO353_00880 0.42 -0.9
199,176 - AO353_00880 0.44 -0.2
199,176 - AO353_00880 0.44 -1.7
199,176 - AO353_00880 0.44 -0.1
199,176 - AO353_00880 0.44 +0.7
199,176 - AO353_00880 0.44 -0.2
199,234 + AO353_00880 0.48 -0.5
199,234 + AO353_00880 0.48 +0.0
199,235 - AO353_00880 0.48 +0.0
199,235 - +0.4
199,375 + AO353_00880 0.57 +0.9
199,376 - AO353_00880 0.57 -0.6
199,705 + AO353_00880 0.79 +0.4
199,705 + AO353_00880 0.79 -0.1
199,705 + AO353_00880 0.79 -1.0
199,706 - AO353_00880 0.80 +0.2
199,706 - AO353_00880 0.80 +2.2
199,725 - AO353_00880 0.81 -1.8
199,817 + AO353_00880 0.87 -0.2
199,942 + +1.1
199,942 + -1.6
199,942 + -1.3
199,942 + -0.6
199,942 + -0.6
199,943 - +0.7
199,943 - -0.3
199,972 + +0.2
199,973 - -0.1
200,156 + -2.0
200,156 + +0.4
200,157 - -0.6
200,394 - AO353_00885 0.24 -2.1
200,394 - AO353_00885 0.24 -2.8
200,394 - AO353_00885 0.24 -1.3
200,443 - +0.7
200,538 + AO353_00885 0.36 -0.3
200,539 - AO353_00885 0.36 -0.7
200,921 - AO353_00885 0.68 -1.0
200,999 - AO353_00885 0.74 -0.8
200,999 - AO353_00885 0.74 -1.8

Or see this region's nucleotide sequence