Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36365 and RR42_RS36370 are separated by 205 nucleotides RR42_RS36370 and RR42_RS36375 are separated by 102 nucleotides
RR42_RS36365: RR42_RS36365 - AraC family transcriptional regulator, at 3,609,888 to 3,610,721
_RS36365
RR42_RS36370: RR42_RS36370 - dihydrodipicolinate synthase, at 3,610,927 to 3,611,853
_RS36370
RR42_RS36375: RR42_RS36375 - aspartate:proton symporter, at 3,611,956 to 3,613,530
_RS36375
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3610.194 kb on + strand, within RR42_RS36365 at 3610.195 kb on - strand, within RR42_RS36365 at 3610.376 kb on + strand, within RR42_RS36365 at 3610.416 kb on + strand, within RR42_RS36365 at 3610.416 kb on + strand, within RR42_RS36365 at 3610.416 kb on + strand, within RR42_RS36365 at 3610.416 kb on + strand, within RR42_RS36365 at 3610.416 kb on + strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.417 kb on - strand, within RR42_RS36365 at 3610.418 kb on + strand, within RR42_RS36365 at 3610.431 kb on + strand, within RR42_RS36365 at 3610.432 kb on - strand, within RR42_RS36365 at 3610.432 kb on - strand, within RR42_RS36365 at 3610.432 kb on - strand, within RR42_RS36365 at 3610.432 kb on - strand, within RR42_RS36365 at 3610.573 kb on + strand, within RR42_RS36365 at 3610.574 kb on - strand, within RR42_RS36365 at 3610.586 kb on + strand, within RR42_RS36365 at 3610.587 kb on - strand, within RR42_RS36365 at 3610.620 kb on + strand, within RR42_RS36365 at 3610.620 kb on + strand, within RR42_RS36365 at 3610.926 kb on + strand at 3610.927 kb on - strand at 3611.267 kb on - strand, within RR42_RS36370 at 3611.342 kb on - strand, within RR42_RS36370 at 3611.342 kb on - strand, within RR42_RS36370 at 3611.443 kb on - strand, within RR42_RS36370 at 3612.047 kb on + strand at 3612.047 kb on + strand at 3612.403 kb on + strand, within RR42_RS36375 at 3612.404 kb on - strand, within RR42_RS36375 at 3612.404 kb on - strand, within RR42_RS36375 at 3612.406 kb on + strand, within RR42_RS36375 at 3612.406 kb on + strand, within RR42_RS36375 at 3612.406 kb on + strand, within RR42_RS36375 at 3612.449 kb on + strand, within RR42_RS36375 at 3612.592 kb on + strand, within RR42_RS36375 at 3612.593 kb on - strand, within RR42_RS36375 at 3612.697 kb on + strand, within RR42_RS36375 at 3612.698 kb on - strand, within RR42_RS36375 at 3612.698 kb on - strand, within RR42_RS36375
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 3,610,194 + RR42_RS36365 0.37 +0.3 3,610,195 - RR42_RS36365 0.37 -0.9 3,610,376 + RR42_RS36365 0.59 -1.5 3,610,416 + RR42_RS36365 0.63 +1.0 3,610,416 + RR42_RS36365 0.63 -0.4 3,610,416 + RR42_RS36365 0.63 -0.2 3,610,416 + RR42_RS36365 0.63 -0.2 3,610,416 + RR42_RS36365 0.63 -0.7 3,610,417 - RR42_RS36365 0.63 -0.9 3,610,417 - RR42_RS36365 0.63 +0.4 3,610,417 - RR42_RS36365 0.63 +0.3 3,610,417 - RR42_RS36365 0.63 +0.5 3,610,417 - RR42_RS36365 0.63 -0.0 3,610,417 - RR42_RS36365 0.63 -0.2 3,610,418 + RR42_RS36365 0.64 -0.8 3,610,431 + RR42_RS36365 0.65 +1.6 3,610,432 - RR42_RS36365 0.65 -0.8 3,610,432 - RR42_RS36365 0.65 -0.1 3,610,432 - RR42_RS36365 0.65 -0.1 3,610,432 - RR42_RS36365 0.65 +0.3 3,610,573 + RR42_RS36365 0.82 +0.5 3,610,574 - RR42_RS36365 0.82 -1.3 3,610,586 + RR42_RS36365 0.84 -0.4 3,610,587 - RR42_RS36365 0.84 +3.5 3,610,620 + RR42_RS36365 0.88 -0.3 3,610,620 + RR42_RS36365 0.88 +0.3 3,610,926 + -0.4 3,610,927 - +0.6 3,611,267 - RR42_RS36370 0.37 +0.6 3,611,342 - RR42_RS36370 0.45 -0.6 3,611,342 - RR42_RS36370 0.45 -0.4 3,611,443 - RR42_RS36370 0.56 +0.3 3,612,047 + -0.1 3,612,047 + -1.4 3,612,403 + RR42_RS36375 0.28 +0.6 3,612,404 - RR42_RS36375 0.28 +0.5 3,612,404 - RR42_RS36375 0.28 +0.6 3,612,406 + RR42_RS36375 0.29 +0.3 3,612,406 + RR42_RS36375 0.29 +0.2 3,612,406 + RR42_RS36375 0.29 +0.2 3,612,449 + RR42_RS36375 0.31 +0.1 3,612,592 + RR42_RS36375 0.40 +0.1 3,612,593 - RR42_RS36375 0.40 +0.6 3,612,697 + RR42_RS36375 0.47 +0.8 3,612,698 - RR42_RS36375 0.47 +0.2 3,612,698 - RR42_RS36375 0.47 +0.1
Or see this region's nucleotide sequence