Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34860

Experiment: R2A with Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34855 and RR42_RS34860 are separated by 11 nucleotidesRR42_RS34860 and RR42_RS34865 are separated by 22 nucleotidesRR42_RS34865 and RR42_RS34870 are separated by 204 nucleotides RR42_RS34855: RR42_RS34855 - LuxR family transcriptional regulator, at 3,270,499 to 3,271,206 _RS34855 RR42_RS34860: RR42_RS34860 - histidine kinase, at 3,271,218 to 3,273,107 _RS34860 RR42_RS34865: RR42_RS34865 - transcriptional regulator, at 3,273,130 to 3,273,426 _RS34865 RR42_RS34870: RR42_RS34870 - hypothetical protein, at 3,273,631 to 3,275,133 _RS34870 Position (kb) 3271 3272 3273 3274Strain fitness (log2 ratio) -1 0 1at 3270.441 kb on + strandat 3270.441 kb on + strandat 3270.442 kb on - strandat 3270.449 kb on - strandat 3270.484 kb on - strandat 3270.484 kb on - strandat 3270.836 kb on - strand, within RR42_RS34855at 3271.063 kb on + strand, within RR42_RS34855at 3271.064 kb on - strand, within RR42_RS34855at 3271.064 kb on - strand, within RR42_RS34855at 3271.129 kb on + strand, within RR42_RS34855at 3271.129 kb on + strand, within RR42_RS34855at 3271.129 kb on + strand, within RR42_RS34855at 3271.130 kb on - strand, within RR42_RS34855at 3271.139 kb on + strandat 3271.474 kb on - strand, within RR42_RS34860at 3271.524 kb on + strand, within RR42_RS34860at 3271.524 kb on + strand, within RR42_RS34860at 3271.525 kb on - strand, within RR42_RS34860at 3271.611 kb on + strand, within RR42_RS34860at 3271.612 kb on - strand, within RR42_RS34860at 3271.632 kb on + strand, within RR42_RS34860at 3271.632 kb on + strand, within RR42_RS34860at 3271.632 kb on + strand, within RR42_RS34860at 3271.633 kb on - strand, within RR42_RS34860at 3271.761 kb on + strand, within RR42_RS34860at 3271.881 kb on + strand, within RR42_RS34860at 3271.882 kb on - strand, within RR42_RS34860at 3272.304 kb on + strand, within RR42_RS34860at 3272.331 kb on + strand, within RR42_RS34860at 3272.331 kb on + strand, within RR42_RS34860at 3272.331 kb on + strand, within RR42_RS34860at 3272.382 kb on + strand, within RR42_RS34860at 3272.382 kb on + strand, within RR42_RS34860at 3272.382 kb on + strand, within RR42_RS34860at 3272.383 kb on - strand, within RR42_RS34860at 3272.818 kb on + strand, within RR42_RS34860at 3272.818 kb on + strand, within RR42_RS34860at 3272.818 kb on + strand, within RR42_RS34860at 3272.818 kb on + strand, within RR42_RS34860at 3272.819 kb on - strand, within RR42_RS34860at 3272.819 kb on - strand, within RR42_RS34860at 3272.823 kb on + strand, within RR42_RS34860at 3272.823 kb on + strand, within RR42_RS34860at 3272.824 kb on - strand, within RR42_RS34860at 3272.824 kb on - strand, within RR42_RS34860at 3272.950 kb on + strandat 3272.990 kb on + strandat 3272.991 kb on - strandat 3273.073 kb on - strandat 3273.120 kb on + strandat 3273.179 kb on + strand, within RR42_RS34865at 3273.179 kb on + strand, within RR42_RS34865at 3273.179 kb on + strand, within RR42_RS34865at 3273.180 kb on - strand, within RR42_RS34865at 3273.219 kb on - strand, within RR42_RS34865at 3273.219 kb on - strand, within RR42_RS34865at 3273.386 kb on + strand, within RR42_RS34865at 3273.387 kb on - strand, within RR42_RS34865at 3273.471 kb on + strandat 3273.471 kb on + strandat 3273.471 kb on + strandat 3273.471 kb on + strandat 3273.475 kb on + strandat 3273.476 kb on - strandat 3273.559 kb on - strandat 3273.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml
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3,270,441 + +0.3
3,270,441 + -0.1
3,270,442 - -0.1
3,270,449 - +1.7
3,270,484 - -0.6
3,270,484 - +0.0
3,270,836 - RR42_RS34855 0.48 +0.6
3,271,063 + RR42_RS34855 0.80 -1.0
3,271,064 - RR42_RS34855 0.80 +0.1
3,271,064 - RR42_RS34855 0.80 +1.5
3,271,129 + RR42_RS34855 0.89 +0.5
3,271,129 + RR42_RS34855 0.89 -0.4
3,271,129 + RR42_RS34855 0.89 +0.7
3,271,130 - RR42_RS34855 0.89 +0.4
3,271,139 + +0.4
3,271,474 - RR42_RS34860 0.14 +0.1
3,271,524 + RR42_RS34860 0.16 +0.5
3,271,524 + RR42_RS34860 0.16 +1.6
3,271,525 - RR42_RS34860 0.16 +0.5
3,271,611 + RR42_RS34860 0.21 +0.4
3,271,612 - RR42_RS34860 0.21 -0.6
3,271,632 + RR42_RS34860 0.22 +0.7
3,271,632 + RR42_RS34860 0.22 +0.9
3,271,632 + RR42_RS34860 0.22 +0.4
3,271,633 - RR42_RS34860 0.22 -1.1
3,271,761 + RR42_RS34860 0.29 +0.1
3,271,881 + RR42_RS34860 0.35 +0.3
3,271,882 - RR42_RS34860 0.35 +0.5
3,272,304 + RR42_RS34860 0.57 +0.3
3,272,331 + RR42_RS34860 0.59 +0.1
3,272,331 + RR42_RS34860 0.59 -0.6
3,272,331 + RR42_RS34860 0.59 -0.4
3,272,382 + RR42_RS34860 0.62 +0.2
3,272,382 + RR42_RS34860 0.62 -0.5
3,272,382 + RR42_RS34860 0.62 +1.2
3,272,383 - RR42_RS34860 0.62 -0.2
3,272,818 + RR42_RS34860 0.85 -0.3
3,272,818 + RR42_RS34860 0.85 +0.2
3,272,818 + RR42_RS34860 0.85 +0.5
3,272,818 + RR42_RS34860 0.85 -0.1
3,272,819 - RR42_RS34860 0.85 +0.7
3,272,819 - RR42_RS34860 0.85 +1.1
3,272,823 + RR42_RS34860 0.85 +0.5
3,272,823 + RR42_RS34860 0.85 -0.3
3,272,824 - RR42_RS34860 0.85 -0.1
3,272,824 - RR42_RS34860 0.85 +0.0
3,272,950 + +0.4
3,272,990 + +0.3
3,272,991 - +0.2
3,273,073 - -0.6
3,273,120 + -1.0
3,273,179 + RR42_RS34865 0.16 -0.8
3,273,179 + RR42_RS34865 0.16 +0.5
3,273,179 + RR42_RS34865 0.16 +0.1
3,273,180 - RR42_RS34865 0.17 +0.6
3,273,219 - RR42_RS34865 0.30 +1.0
3,273,219 - RR42_RS34865 0.30 +0.1
3,273,386 + RR42_RS34865 0.86 +0.1
3,273,387 - RR42_RS34865 0.87 +0.3
3,273,471 + +0.2
3,273,471 + -0.6
3,273,471 + +0.3
3,273,471 + +0.3
3,273,475 + -0.1
3,273,476 - +0.4
3,273,559 - +0.4
3,273,633 - +0.2

Or see this region's nucleotide sequence