Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32755

Experiment: R2A with Bacitracin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS32750 and RR42_RS32755 are separated by 134 nucleotidesRR42_RS32755 and RR42_RS32760 are separated by 311 nucleotides RR42_RS32750: RR42_RS32750 - acetyl-CoA carboxylase, at 2,742,684 to 2,744,303 _RS32750 RR42_RS32755: RR42_RS32755 - IclR family transcriptional regulator, at 2,744,438 to 2,745,196 _RS32755 RR42_RS32760: RR42_RS32760 - hypothetical protein, at 2,745,508 to 2,746,641 _RS32760 Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1at 2743.700 kb on - strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.720 kb on + strand, within RR42_RS32750at 2743.721 kb on - strand, within RR42_RS32750at 2743.721 kb on - strand, within RR42_RS32750at 2743.721 kb on - strand, within RR42_RS32750at 2743.721 kb on - strand, within RR42_RS32750at 2743.799 kb on - strand, within RR42_RS32750at 2743.799 kb on - strand, within RR42_RS32750at 2743.837 kb on + strandat 2743.838 kb on - strand, within RR42_RS32750at 2743.903 kb on - strand, within RR42_RS32750at 2744.776 kb on + strand, within RR42_RS32755at 2744.813 kb on + strand, within RR42_RS32755at 2744.814 kb on - strand, within RR42_RS32755at 2744.951 kb on + strand, within RR42_RS32755at 2744.972 kb on + strand, within RR42_RS32755at 2744.972 kb on + strand, within RR42_RS32755at 2744.989 kb on + strand, within RR42_RS32755at 2745.039 kb on - strand, within RR42_RS32755at 2745.119 kb on - strand, within RR42_RS32755at 2745.128 kb on - strandat 2745.128 kb on - strandat 2745.214 kb on + strandat 2745.280 kb on + strandat 2745.301 kb on + strandat 2745.414 kb on + strandat 2745.415 kb on - strandat 2745.415 kb on - strandat 2745.526 kb on + strandat 2745.526 kb on + strandat 2745.527 kb on - strandat 2745.589 kb on + strandat 2745.802 kb on - strand, within RR42_RS32760at 2745.916 kb on + strand, within RR42_RS32760at 2745.917 kb on - strand, within RR42_RS32760at 2745.973 kb on + strand, within RR42_RS32760at 2745.975 kb on + strand, within RR42_RS32760at 2745.975 kb on + strand, within RR42_RS32760at 2745.975 kb on + strand, within RR42_RS32760at 2745.975 kb on + strand, within RR42_RS32760at 2745.975 kb on + strand, within RR42_RS32760at 2745.979 kb on + strand, within RR42_RS32760at 2745.979 kb on + strand, within RR42_RS32760at 2745.979 kb on + strand, within RR42_RS32760at 2745.979 kb on + strand, within RR42_RS32760at 2745.980 kb on - strand, within RR42_RS32760at 2745.983 kb on - strand, within RR42_RS32760at 2746.021 kb on + strand, within RR42_RS32760at 2746.022 kb on - strand, within RR42_RS32760at 2746.022 kb on - strand, within RR42_RS32760at 2746.051 kb on + strand, within RR42_RS32760at 2746.052 kb on - strand, within RR42_RS32760at 2746.141 kb on + strand, within RR42_RS32760at 2746.142 kb on - strand, within RR42_RS32760at 2746.142 kb on - strand, within RR42_RS32760at 2746.142 kb on - strand, within RR42_RS32760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml
remove
2,743,700 - RR42_RS32750 0.63 +0.0
2,743,720 + RR42_RS32750 0.64 +0.8
2,743,720 + RR42_RS32750 0.64 -0.4
2,743,720 + RR42_RS32750 0.64 +0.1
2,743,720 + RR42_RS32750 0.64 -0.3
2,743,720 + RR42_RS32750 0.64 -2.1
2,743,720 + RR42_RS32750 0.64 -0.4
2,743,720 + RR42_RS32750 0.64 +0.1
2,743,721 - RR42_RS32750 0.64 +0.9
2,743,721 - RR42_RS32750 0.64 -1.0
2,743,721 - RR42_RS32750 0.64 -0.2
2,743,721 - RR42_RS32750 0.64 +0.6
2,743,799 - RR42_RS32750 0.69 +0.6
2,743,799 - RR42_RS32750 0.69 +0.3
2,743,837 + -0.1
2,743,838 - RR42_RS32750 0.71 -0.3
2,743,903 - RR42_RS32750 0.75 -1.1
2,744,776 + RR42_RS32755 0.45 +0.9
2,744,813 + RR42_RS32755 0.49 +0.4
2,744,814 - RR42_RS32755 0.50 -0.5
2,744,951 + RR42_RS32755 0.68 -0.0
2,744,972 + RR42_RS32755 0.70 +0.9
2,744,972 + RR42_RS32755 0.70 +0.2
2,744,989 + RR42_RS32755 0.73 +0.5
2,745,039 - RR42_RS32755 0.79 +0.2
2,745,119 - RR42_RS32755 0.90 +0.6
2,745,128 - -0.5
2,745,128 - -0.4
2,745,214 + -0.3
2,745,280 + +0.8
2,745,301 + -0.3
2,745,414 + +0.1
2,745,415 - -0.9
2,745,415 - -1.0
2,745,526 + -0.6
2,745,526 + -0.4
2,745,527 - +1.6
2,745,589 + -0.2
2,745,802 - RR42_RS32760 0.26 -0.5
2,745,916 + RR42_RS32760 0.36 -1.1
2,745,917 - RR42_RS32760 0.36 -0.2
2,745,973 + RR42_RS32760 0.41 -0.9
2,745,975 + RR42_RS32760 0.41 +0.4
2,745,975 + RR42_RS32760 0.41 -0.6
2,745,975 + RR42_RS32760 0.41 +0.6
2,745,975 + RR42_RS32760 0.41 -0.8
2,745,975 + RR42_RS32760 0.41 +0.5
2,745,979 + RR42_RS32760 0.42 +0.5
2,745,979 + RR42_RS32760 0.42 +0.9
2,745,979 + RR42_RS32760 0.42 -2.5
2,745,979 + RR42_RS32760 0.42 -0.1
2,745,980 - RR42_RS32760 0.42 -0.6
2,745,983 - RR42_RS32760 0.42 +0.3
2,746,021 + RR42_RS32760 0.45 +1.7
2,746,022 - RR42_RS32760 0.45 -0.8
2,746,022 - RR42_RS32760 0.45 -0.6
2,746,051 + RR42_RS32760 0.48 -0.4
2,746,052 - RR42_RS32760 0.48 +1.2
2,746,141 + RR42_RS32760 0.56 +0.7
2,746,142 - RR42_RS32760 0.56 -0.1
2,746,142 - RR42_RS32760 0.56 -0.1
2,746,142 - RR42_RS32760 0.56 +0.3

Or see this region's nucleotide sequence