Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29875

Experiment: R2A with Bacitracin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Bacitracin 0.5 mg/ml
2,066,462	+				-0.2
2,066,489	+				-0.2
2,066,490	-				-0.5
2,066,537	-				+0.9
2,066,539	-				-1.0
2,066,570	-				+0.9
2,066,665	+				-0.3
2,066,809	+				-0.8
2,066,810	-				+0.4
2,066,810	-				-1.0
2,066,836	+				+0.4
2,066,836	+				+0.1
2,066,836	+				-0.9
2,066,852	+				-0.4
2,066,852	+				+0.2
2,066,853	-				-1.7
2,066,853	-				+1.7
2,066,853	-				-0.9
2,066,853	-				+0.4
2,066,853	-				-0.4
2,066,857	+				-0.1
2,066,858	-				+0.2
2,066,858	-				-0.2
2,066,902	-		RR42_RS29870	0.18	+0.7
2,066,902	-		RR42_RS29870	0.18	-0.4
2,066,902	-		RR42_RS29870	0.18	+0.7
2,066,910	+		RR42_RS29870	0.19	+0.6
2,067,050	+		RR42_RS29870	0.46	-0.2
2,067,051	-		RR42_RS29870	0.46	+0.0
2,067,051	-		RR42_RS29870	0.46	-1.4
2,067,051	-		RR42_RS29870	0.46	-1.0
2,067,111	+		RR42_RS29870	0.58	-1.2
2,067,112	-		RR42_RS29870	0.58	+1.3
2,067,276	+		RR42_RS29870	0.89	-1.7
2,067,277	-		RR42_RS29870	0.89	-1.0
2,067,280	+				+0.1
2,067,280	+				-0.1
2,067,280	+				+0.3
2,067,281	-				-0.1
2,067,281	-				+0.4
2,067,281	-				+0.5
2,067,281	-				+0.2
2,067,281	-				+0.7
2,067,323	-				+0.3
2,067,346	+				+0.0
2,067,347	-				-0.4
2,067,401	+				-1.1
2,067,401	+				-0.4
2,067,402	-				+0.2
2,067,461	+				+0.5
2,067,461	+				-0.5
2,067,465	+				-1.4
2,067,465	+				+0.3
2,067,465	+				-0.2
2,067,466	-				-0.7
2,067,469	+				-0.2
2,067,470	-				-1.0
2,067,514	+				+0.0
2,067,515	-				+1.4
2,067,515	-				+0.6
2,067,532	+				+0.1
2,067,533	-				-0.6
2,067,533	-				-0.2
2,067,672	-		RR42_RS29875	0.17	+0.9
2,067,672	-		RR42_RS29875	0.17	-0.6
2,067,672	-		RR42_RS29875	0.17	-0.1
2,067,937	+		RR42_RS29875	0.38	+0.0
2,067,937	+		RR42_RS29875	0.38	-0.2
2,067,937	+		RR42_RS29875	0.38	+0.2
2,067,937	+		RR42_RS29875	0.38	+0.4
2,067,937	+		RR42_RS29875	0.38	+0.5
2,067,938	-		RR42_RS29875	0.38	+0.2
2,067,938	-		RR42_RS29875	0.38	-0.1
2,067,938	-		RR42_RS29875	0.38	-1.1
2,067,938	-		RR42_RS29875	0.38	+0.5
2,067,951	-		RR42_RS29875	0.39	+0.0
2,068,050	+		RR42_RS29875	0.47	-1.3
2,068,051	-		RR42_RS29875	0.47	-2.1
2,068,051	-		RR42_RS29875	0.47	-0.9
2,068,123	+		RR42_RS29875	0.53	-0.1
2,068,269	+		RR42_RS29875	0.64	-0.4
2,068,270	-		RR42_RS29875	0.64	+0.5
2,068,298	-		RR42_RS29875	0.67	-0.6
2,068,351	+		RR42_RS29875	0.71	-0.4
2,068,352	-		RR42_RS29875	0.71	+0.0
2,068,352	-		RR42_RS29875	0.71	+0.7
2,068,352	-		RR42_RS29875	0.71	+0.8
2,068,352	-		RR42_RS29875	0.71	-1.4
2,068,438	+		RR42_RS29875	0.78	+1.4
2,068,438	+		RR42_RS29875	0.78	-1.1
2,068,438	+		RR42_RS29875	0.78	-0.0
2,068,439	-		RR42_RS29875	0.78	-0.4
2,068,439	-		RR42_RS29875	0.78	-1.0
2,068,439	-		RR42_RS29875	0.78	+0.7
2,068,449	-		RR42_RS29875	0.78	-0.1
2,068,562	+		RR42_RS29875	0.87	+0.1
2,068,562	+		RR42_RS29875	0.87	+0.4
2,068,562	+		RR42_RS29875	0.87	+1.2
2,068,563	-		RR42_RS29875	0.88	+1.3
2,068,563	-		RR42_RS29875	0.88	+0.1
2,068,584	+		RR42_RS29875	0.89	-0.2
2,068,584	+		RR42_RS29875	0.89	-0.3
2,068,608	-				-0.0
2,068,608	-				+0.6
2,068,608	-				+0.4
2,068,719	+				+0.0
2,068,720	-				+0.4
2,068,720	-				+0.1
2,068,720	-				+0.5
2,068,720	-				-0.0
2,068,720	-				+0.0
2,068,731	+				+1.2
2,068,732	-				-1.4
2,068,847	-		RR42_RS29880	0.11	+0.1
2,068,929	+		RR42_RS29880	0.19	-0.4
2,068,929	+		RR42_RS29880	0.19	-0.8
2,068,930	-		RR42_RS29880	0.19	-0.3
2,068,930	-		RR42_RS29880	0.19	-0.1
2,068,930	-		RR42_RS29880	0.19	+0.3
2,068,930	-		RR42_RS29880	0.19	-0.6
2,068,930	-		RR42_RS29880	0.19	+0.7
2,068,930	-		RR42_RS29880	0.19	+0.1
2,068,930	-		RR42_RS29880	0.19	+0.6
2,068,931	+		RR42_RS29880	0.19	-0.3
2,068,932	-		RR42_RS29880	0.19	-0.6
2,068,932	-		RR42_RS29880	0.19	-0.0
2,068,960	+		RR42_RS29880	0.21	-0.8
2,068,961	-		RR42_RS29880	0.22	+0.4
2,069,226	-		RR42_RS29880	0.46	+0.2
2,069,226	-		RR42_RS29880	0.46	-0.8
2,069,317	+		RR42_RS29880	0.55	-0.2
2,069,317	+		RR42_RS29880	0.55	-0.6
2,069,318	-		RR42_RS29880	0.55	-0.3
2,069,327	+		RR42_RS29880	0.56	+0.6
2,069,327	+		RR42_RS29880	0.56	-0.5
2,069,516	-		RR42_RS29880	0.73	+0.1
2,069,516	-		RR42_RS29880	0.73	-1.8
2,069,554	-		RR42_RS29880	0.77	-0.4
2,069,637	+		RR42_RS29880	0.84	-1.0
2,069,637	+		RR42_RS29880	0.84	+0.7
2,069,637	+		RR42_RS29880	0.84	-0.1
2,069,637	+		RR42_RS29880	0.84	+0.3
2,069,637	+		RR42_RS29880	0.84	-0.7
2,069,637	+		RR42_RS29880	0.84	-0.7
2,069,638	-		RR42_RS29880	0.85	+0.6
2,069,638	-		RR42_RS29880	0.85	+0.1
2,069,638	-		RR42_RS29880	0.85	+0.1