Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26585 and RR42_RS26590 are separated by 42 nucleotides RR42_RS26590 and RR42_RS26595 are separated by 142 nucleotides
RR42_RS26585: RR42_RS26585 - TonB-dependent receptor, at 1,317,958 to 1,320,315
_RS26585
RR42_RS26590: RR42_RS26590 - hypothetical protein, at 1,320,358 to 1,320,732
_RS26590
RR42_RS26595: RR42_RS26595 - cell division protein Fic, at 1,320,875 to 1,322,254
_RS26595
Position (kb)
1320
1321 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1319.376 kb on - strand, within RR42_RS26585 at 1319.423 kb on + strand, within RR42_RS26585 at 1319.453 kb on + strand, within RR42_RS26585 at 1319.487 kb on + strand, within RR42_RS26585 at 1319.488 kb on - strand, within RR42_RS26585 at 1319.513 kb on - strand, within RR42_RS26585 at 1319.549 kb on + strand, within RR42_RS26585 at 1319.732 kb on + strand, within RR42_RS26585 at 1319.822 kb on + strand, within RR42_RS26585 at 1319.822 kb on + strand, within RR42_RS26585 at 1319.823 kb on - strand, within RR42_RS26585 at 1319.823 kb on - strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.858 kb on + strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.859 kb on - strand, within RR42_RS26585 at 1319.966 kb on + strand, within RR42_RS26585 at 1319.967 kb on - strand, within RR42_RS26585 at 1320.036 kb on + strand, within RR42_RS26585 at 1320.068 kb on + strand, within RR42_RS26585 at 1320.068 kb on + strand, within RR42_RS26585 at 1320.069 kb on - strand, within RR42_RS26585 at 1320.253 kb on + strand at 1320.284 kb on - strand at 1320.359 kb on + strand at 1320.377 kb on - strand at 1320.536 kb on + strand, within RR42_RS26590 at 1320.736 kb on + strand at 1320.737 kb on - strand at 1320.737 kb on - strand at 1320.865 kb on - strand at 1320.948 kb on + strand at 1320.948 kb on + strand at 1320.948 kb on + strand at 1320.949 kb on - strand at 1320.949 kb on - strand at 1321.004 kb on + strand at 1321.004 kb on + strand at 1321.004 kb on + strand at 1321.005 kb on - strand at 1321.005 kb on - strand at 1321.005 kb on - strand at 1321.085 kb on + strand, within RR42_RS26595 at 1321.174 kb on - strand, within RR42_RS26595 at 1321.195 kb on - strand, within RR42_RS26595 at 1321.195 kb on - strand, within RR42_RS26595 at 1321.207 kb on - strand, within RR42_RS26595 at 1321.207 kb on - strand, within RR42_RS26595 at 1321.207 kb on - strand, within RR42_RS26595 at 1321.242 kb on + strand, within RR42_RS26595 at 1321.267 kb on - strand, within RR42_RS26595 at 1321.281 kb on - strand, within RR42_RS26595 at 1321.294 kb on + strand, within RR42_RS26595 at 1321.294 kb on + strand, within RR42_RS26595 at 1321.295 kb on - strand, within RR42_RS26595 at 1321.295 kb on - strand, within RR42_RS26595 at 1321.295 kb on - strand, within RR42_RS26595 at 1321.304 kb on + strand, within RR42_RS26595 at 1321.304 kb on + strand, within RR42_RS26595 at 1321.305 kb on - strand, within RR42_RS26595 at 1321.305 kb on - strand, within RR42_RS26595 at 1321.380 kb on + strand, within RR42_RS26595 at 1321.380 kb on + strand, within RR42_RS26595 at 1321.380 kb on + strand, within RR42_RS26595 at 1321.381 kb on - strand, within RR42_RS26595 at 1321.427 kb on - strand, within RR42_RS26595 at 1321.497 kb on + strand, within RR42_RS26595 at 1321.497 kb on + strand, within RR42_RS26595 at 1321.582 kb on + strand, within RR42_RS26595 at 1321.583 kb on - strand, within RR42_RS26595 at 1321.602 kb on + strand, within RR42_RS26595 at 1321.602 kb on + strand, within RR42_RS26595 at 1321.602 kb on + strand, within RR42_RS26595 at 1321.603 kb on - strand, within RR42_RS26595 at 1321.603 kb on - strand, within RR42_RS26595 at 1321.603 kb on - strand, within RR42_RS26595
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 1,319,376 - RR42_RS26585 0.60 -0.2 1,319,423 + RR42_RS26585 0.62 +0.3 1,319,453 + RR42_RS26585 0.63 -0.7 1,319,487 + RR42_RS26585 0.65 -0.3 1,319,488 - RR42_RS26585 0.65 +0.3 1,319,513 - RR42_RS26585 0.66 +0.6 1,319,549 + RR42_RS26585 0.67 +0.0 1,319,732 + RR42_RS26585 0.75 +0.4 1,319,822 + RR42_RS26585 0.79 -0.7 1,319,822 + RR42_RS26585 0.79 +0.2 1,319,823 - RR42_RS26585 0.79 +0.7 1,319,823 - RR42_RS26585 0.79 +0.0 1,319,858 + RR42_RS26585 0.81 +0.3 1,319,858 + RR42_RS26585 0.81 +0.1 1,319,858 + RR42_RS26585 0.81 -0.6 1,319,858 + RR42_RS26585 0.81 +0.3 1,319,858 + RR42_RS26585 0.81 -0.3 1,319,858 + RR42_RS26585 0.81 -0.7 1,319,858 + RR42_RS26585 0.81 +0.7 1,319,858 + RR42_RS26585 0.81 -1.1 1,319,858 + RR42_RS26585 0.81 +0.1 1,319,858 + RR42_RS26585 0.81 -0.5 1,319,859 - RR42_RS26585 0.81 -0.1 1,319,859 - RR42_RS26585 0.81 +0.7 1,319,859 - RR42_RS26585 0.81 +0.3 1,319,859 - RR42_RS26585 0.81 +0.7 1,319,859 - RR42_RS26585 0.81 -0.2 1,319,859 - RR42_RS26585 0.81 -0.8 1,319,966 + RR42_RS26585 0.85 -0.0 1,319,967 - RR42_RS26585 0.85 -1.6 1,320,036 + RR42_RS26585 0.88 +0.6 1,320,068 + RR42_RS26585 0.89 -0.0 1,320,068 + RR42_RS26585 0.89 -0.8 1,320,069 - RR42_RS26585 0.90 +0.6 1,320,253 + +0.1 1,320,284 - -1.0 1,320,359 + -0.0 1,320,377 - -1.9 1,320,536 + RR42_RS26590 0.47 +1.1 1,320,736 + -2.2 1,320,737 - -0.3 1,320,737 - +0.1 1,320,865 - -0.6 1,320,948 + +0.1 1,320,948 + -0.0 1,320,948 + -0.5 1,320,949 - -0.4 1,320,949 - +0.7 1,321,004 + -0.1 1,321,004 + -0.4 1,321,004 + -1.1 1,321,005 - +0.2 1,321,005 - +0.8 1,321,005 - -0.1 1,321,085 + RR42_RS26595 0.15 -0.1 1,321,174 - RR42_RS26595 0.22 +0.5 1,321,195 - RR42_RS26595 0.23 -2.8 1,321,195 - RR42_RS26595 0.23 -0.4 1,321,207 - RR42_RS26595 0.24 -0.6 1,321,207 - RR42_RS26595 0.24 -0.4 1,321,207 - RR42_RS26595 0.24 +0.4 1,321,242 + RR42_RS26595 0.27 +0.3 1,321,267 - RR42_RS26595 0.28 -0.5 1,321,281 - RR42_RS26595 0.29 -0.5 1,321,294 + RR42_RS26595 0.30 +0.0 1,321,294 + RR42_RS26595 0.30 -0.1 1,321,295 - RR42_RS26595 0.30 -0.0 1,321,295 - RR42_RS26595 0.30 -0.9 1,321,295 - RR42_RS26595 0.30 +0.4 1,321,304 + RR42_RS26595 0.31 +0.3 1,321,304 + RR42_RS26595 0.31 -0.9 1,321,305 - RR42_RS26595 0.31 -1.0 1,321,305 - RR42_RS26595 0.31 -0.1 1,321,380 + RR42_RS26595 0.37 +0.6 1,321,380 + RR42_RS26595 0.37 -0.5 1,321,380 + RR42_RS26595 0.37 +0.6 1,321,381 - RR42_RS26595 0.37 -0.2 1,321,427 - RR42_RS26595 0.40 +0.2 1,321,497 + RR42_RS26595 0.45 +0.0 1,321,497 + RR42_RS26595 0.45 +0.5 1,321,582 + RR42_RS26595 0.51 +0.1 1,321,583 - RR42_RS26595 0.51 +0.6 1,321,602 + RR42_RS26595 0.53 -0.2 1,321,602 + RR42_RS26595 0.53 +0.3 1,321,602 + RR42_RS26595 0.53 -0.3 1,321,603 - RR42_RS26595 0.53 -1.9 1,321,603 - RR42_RS26595 0.53 -0.8 1,321,603 - RR42_RS26595 0.53 +0.6
Or see this region's nucleotide sequence