Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25895

Experiment: R2A with Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25890 and RR42_RS25895 are separated by 148 nucleotidesRR42_RS25895 and RR42_RS25900 are separated by 268 nucleotides RR42_RS25890: RR42_RS25890 - Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data), at 1,149,447 to 1,150,538 _RS25890 RR42_RS25895: RR42_RS25895 - IclR family transcriptional regulator, at 1,150,687 to 1,151,460 _RS25895 RR42_RS25900: RR42_RS25900 - enoyl-CoA hydratase, at 1,151,729 to 1,152,505 _RS25900 Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -1 0 1at 1149.691 kb on - strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1149.867 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.011 kb on + strand, within RR42_RS25890at 1150.012 kb on - strand, within RR42_RS25890at 1150.062 kb on + strand, within RR42_RS25890at 1150.063 kb on - strand, within RR42_RS25890at 1150.218 kb on - strand, within RR42_RS25890at 1150.218 kb on - strand, within RR42_RS25890at 1150.391 kb on - strand, within RR42_RS25890at 1150.537 kb on - strandat 1150.570 kb on + strandat 1150.570 kb on + strandat 1150.570 kb on + strandat 1150.570 kb on + strandat 1150.570 kb on + strandat 1150.571 kb on - strandat 1150.571 kb on - strandat 1150.764 kb on - strandat 1150.884 kb on - strand, within RR42_RS25895at 1150.898 kb on + strand, within RR42_RS25895at 1150.898 kb on + strand, within RR42_RS25895at 1151.206 kb on + strand, within RR42_RS25895at 1151.300 kb on + strand, within RR42_RS25895at 1151.301 kb on - strand, within RR42_RS25895at 1151.663 kb on - strandat 1151.668 kb on - strandat 1151.692 kb on + strandat 1151.692 kb on + strandat 1151.693 kb on - strandat 1151.794 kb on - strandat 1151.794 kb on - strandat 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.875 kb on + strand, within RR42_RS25900at 1151.876 kb on - strand, within RR42_RS25900at 1151.876 kb on - strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1151.981 kb on + strand, within RR42_RS25900at 1152.002 kb on + strand, within RR42_RS25900at 1152.003 kb on - strand, within RR42_RS25900at 1152.209 kb on + strand, within RR42_RS25900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml
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1,149,691 - RR42_RS25890 0.22 -0.4
1,149,867 + RR42_RS25890 0.38 -0.6
1,149,867 + RR42_RS25890 0.38 -0.7
1,149,867 + RR42_RS25890 0.38 -0.2
1,150,011 + RR42_RS25890 0.52 -1.6
1,150,011 + RR42_RS25890 0.52 -0.8
1,150,011 + RR42_RS25890 0.52 +0.2
1,150,012 - RR42_RS25890 0.52 +0.8
1,150,062 + RR42_RS25890 0.56 -0.6
1,150,063 - RR42_RS25890 0.56 -0.1
1,150,218 - RR42_RS25890 0.71 -0.8
1,150,218 - RR42_RS25890 0.71 -0.5
1,150,391 - RR42_RS25890 0.86 -0.4
1,150,537 - -0.2
1,150,570 + -0.8
1,150,570 + -0.2
1,150,570 + -0.4
1,150,570 + -0.9
1,150,570 + +0.7
1,150,571 - -0.2
1,150,571 - -1.3
1,150,764 - +1.0
1,150,884 - RR42_RS25895 0.25 -0.7
1,150,898 + RR42_RS25895 0.27 -0.4
1,150,898 + RR42_RS25895 0.27 +0.8
1,151,206 + RR42_RS25895 0.67 +0.1
1,151,300 + RR42_RS25895 0.79 -1.5
1,151,301 - RR42_RS25895 0.79 -0.7
1,151,663 - -0.4
1,151,668 - -0.7
1,151,692 + -0.6
1,151,692 + -1.0
1,151,693 - -0.4
1,151,794 - -1.5
1,151,794 - +0.8
1,151,875 + RR42_RS25900 0.19 -0.2
1,151,875 + RR42_RS25900 0.19 -0.8
1,151,875 + RR42_RS25900 0.19 -0.7
1,151,875 + RR42_RS25900 0.19 +0.1
1,151,876 - RR42_RS25900 0.19 -0.5
1,151,876 - RR42_RS25900 0.19 -0.0
1,151,981 + RR42_RS25900 0.32 +1.0
1,151,981 + RR42_RS25900 0.32 +1.2
1,151,981 + RR42_RS25900 0.32 -1.0
1,151,981 + RR42_RS25900 0.32 -0.2
1,152,002 + RR42_RS25900 0.35 -1.1
1,152,003 - RR42_RS25900 0.35 +0.1
1,152,209 + RR42_RS25900 0.62 -0.3

Or see this region's nucleotide sequence