Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20380 and RR42_RS20385 are separated by 37 nucleotides
RR42_RS20380: RR42_RS20380 - histidine kinase, at 4,412,996 to 4,414,615
_RS20380
RR42_RS20385: RR42_RS20385 - methyltransferase, at 4,414,653 to 4,415,192
_RS20385
Position (kb)
4414
4415
4416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4414.271 kb on + strand, within RR42_RS20380 at 4414.271 kb on + strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.272 kb on - strand, within RR42_RS20380 at 4414.423 kb on + strand, within RR42_RS20380 at 4414.423 kb on + strand, within RR42_RS20380 at 4414.756 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.780 kb on + strand, within RR42_RS20385 at 4414.781 kb on - strand, within RR42_RS20385 at 4414.781 kb on - strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.786 kb on + strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.787 kb on - strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.948 kb on + strand, within RR42_RS20385 at 4414.949 kb on - strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.955 kb on + strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4414.956 kb on - strand, within RR42_RS20385 at 4415.026 kb on + strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.027 kb on - strand, within RR42_RS20385 at 4415.069 kb on - strand, within RR42_RS20385 at 4415.231 kb on + strand at 4415.233 kb on + strand at 4415.233 kb on + strand at 4415.233 kb on + strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.234 kb on - strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.288 kb on + strand at 4415.289 kb on - strand at 4415.289 kb on - strand at 4415.289 kb on - strand at 4415.299 kb on - strand at 4415.335 kb on - strand at 4415.335 kb on - strand at 4415.335 kb on - strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.359 kb on + strand at 4415.377 kb on + strand at 4415.378 kb on - strand at 4415.378 kb on - strand at 4415.378 kb on - strand at 4415.440 kb on + strand at 4415.440 kb on + strand at 4415.444 kb on + strand at 4415.444 kb on + strand at 4415.445 kb on - strand at 4415.445 kb on - strand at 4415.445 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.447 kb on - strand at 4415.499 kb on + strand at 4415.555 kb on + strand at 4415.555 kb on + strand at 4415.559 kb on + strand at 4415.559 kb on + strand at 4415.560 kb on - strand at 4415.706 kb on + strand at 4415.707 kb on - strand at 4415.707 kb on - strand at 4415.709 kb on + strand at 4415.866 kb on - strand at 4415.906 kb on + strand at 4415.906 kb on + strand at 4415.908 kb on + strand at 4415.938 kb on + strand at 4415.939 kb on - strand at 4415.939 kb on - strand at 4415.939 kb on - strand at 4415.940 kb on + strand at 4415.940 kb on + strand at 4415.941 kb on - strand at 4415.962 kb on + strand at 4415.962 kb on + strand at 4415.962 kb on + strand at 4415.962 kb on + strand at 4415.963 kb on - strand at 4415.963 kb on - strand at 4416.078 kb on + strand at 4416.078 kb on + strand at 4416.078 kb on + strand at 4416.119 kb on + strand at 4416.119 kb on + strand at 4416.119 kb on + strand at 4416.120 kb on - strand at 4416.120 kb on - strand at 4416.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 4,414,271 + RR42_RS20380 0.79 +0.2 4,414,271 + RR42_RS20380 0.79 -0.4 4,414,272 - RR42_RS20380 0.79 +0.3 4,414,272 - RR42_RS20380 0.79 +0.3 4,414,272 - RR42_RS20380 0.79 +0.2 4,414,272 - RR42_RS20380 0.79 -0.4 4,414,423 + RR42_RS20380 0.88 +0.6 4,414,423 + RR42_RS20380 0.88 +0.8 4,414,756 + RR42_RS20385 0.19 -0.6 4,414,780 + RR42_RS20385 0.24 -0.7 4,414,780 + RR42_RS20385 0.24 -1.4 4,414,780 + RR42_RS20385 0.24 -0.9 4,414,781 - RR42_RS20385 0.24 +0.1 4,414,781 - RR42_RS20385 0.24 -0.1 4,414,786 + RR42_RS20385 0.25 -0.8 4,414,786 + RR42_RS20385 0.25 -0.2 4,414,786 + RR42_RS20385 0.25 +0.1 4,414,786 + RR42_RS20385 0.25 -0.4 4,414,786 + RR42_RS20385 0.25 +0.1 4,414,786 + RR42_RS20385 0.25 -1.1 4,414,786 + RR42_RS20385 0.25 -0.5 4,414,786 + RR42_RS20385 0.25 +0.1 4,414,787 - RR42_RS20385 0.25 -0.2 4,414,787 - RR42_RS20385 0.25 -0.3 4,414,787 - RR42_RS20385 0.25 +0.2 4,414,787 - RR42_RS20385 0.25 -0.5 4,414,787 - RR42_RS20385 0.25 -0.6 4,414,787 - RR42_RS20385 0.25 -0.6 4,414,787 - RR42_RS20385 0.25 -0.7 4,414,948 + RR42_RS20385 0.55 -0.5 4,414,948 + RR42_RS20385 0.55 -0.1 4,414,948 + RR42_RS20385 0.55 -0.8 4,414,948 + RR42_RS20385 0.55 -0.7 4,414,948 + RR42_RS20385 0.55 +0.0 4,414,949 - RR42_RS20385 0.55 -0.3 4,414,955 + RR42_RS20385 0.56 -0.3 4,414,955 + RR42_RS20385 0.56 -0.8 4,414,955 + RR42_RS20385 0.56 -0.1 4,414,955 + RR42_RS20385 0.56 +0.4 4,414,956 - RR42_RS20385 0.56 -0.1 4,414,956 - RR42_RS20385 0.56 -0.6 4,414,956 - RR42_RS20385 0.56 -0.1 4,414,956 - RR42_RS20385 0.56 -1.6 4,415,026 + RR42_RS20385 0.69 +0.0 4,415,027 - RR42_RS20385 0.69 +0.5 4,415,027 - RR42_RS20385 0.69 -2.0 4,415,027 - RR42_RS20385 0.69 -0.7 4,415,027 - RR42_RS20385 0.69 +0.3 4,415,069 - RR42_RS20385 0.77 +1.2 4,415,231 + -0.4 4,415,233 + -1.3 4,415,233 + -1.1 4,415,233 + -0.3 4,415,234 - -0.3 4,415,234 - -0.1 4,415,234 - -0.1 4,415,234 - -0.6 4,415,234 - -0.2 4,415,234 - +0.0 4,415,234 - +0.3 4,415,288 + -1.5 4,415,288 + -0.1 4,415,288 + -0.8 4,415,288 + -0.1 4,415,289 - -1.6 4,415,289 - -0.3 4,415,289 - -0.1 4,415,299 - -1.4 4,415,335 - -0.6 4,415,335 - -1.1 4,415,335 - -0.6 4,415,359 + -1.6 4,415,359 + +1.2 4,415,359 + +1.5 4,415,359 + +0.3 4,415,359 + +0.2 4,415,377 + -1.0 4,415,378 - -0.5 4,415,378 - +1.9 4,415,378 - -1.0 4,415,440 + -0.4 4,415,440 + -0.6 4,415,444 + -1.5 4,415,444 + -0.1 4,415,445 - -0.4 4,415,445 - -1.3 4,415,445 - -1.2 4,415,447 - -0.3 4,415,447 - -0.4 4,415,447 - +0.0 4,415,447 - -0.4 4,415,447 - -2.0 4,415,499 + +0.0 4,415,555 + -1.9 4,415,555 + -1.8 4,415,559 + -1.1 4,415,559 + +0.4 4,415,560 - +1.1 4,415,706 + -1.3 4,415,707 - -1.1 4,415,707 - -1.3 4,415,709 + -0.2 4,415,866 - +1.1 4,415,906 + -0.4 4,415,906 + +0.8 4,415,908 + +0.1 4,415,938 + +0.1 4,415,939 - -0.9 4,415,939 - -0.5 4,415,939 - -0.7 4,415,940 + -0.2 4,415,940 + -0.6 4,415,941 - -0.1 4,415,962 + -0.3 4,415,962 + -0.8 4,415,962 + -1.1 4,415,962 + -1.2 4,415,963 - -0.7 4,415,963 - -0.4 4,416,078 + +0.2 4,416,078 + -0.3 4,416,078 + +0.6 4,416,119 + -0.9 4,416,119 + +0.8 4,416,119 + -0.1 4,416,120 - -1.4 4,416,120 - -1.8 4,416,134 - -0.2
Or see this region's nucleotide sequence