Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16010 and RR42_RS16015 are separated by 324 nucleotides RR42_RS16015 and RR42_RS16020 are separated by 323 nucleotides
RR42_RS16010: RR42_RS16010 - ATP-binding protein, at 3,463,207 to 3,464,295
_RS16010
RR42_RS16015: RR42_RS16015 - membrane protein, at 3,464,620 to 3,465,252
_RS16015
RR42_RS16020: RR42_RS16020 - methionyl-tRNA synthetase, at 3,465,576 to 3,467,645
_RS16020
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3464.315 kb on + strand at 3464.345 kb on - strand at 3464.352 kb on + strand at 3464.352 kb on + strand at 3464.353 kb on - strand at 3464.353 kb on - strand at 3464.353 kb on - strand at 3464.388 kb on - strand at 3464.426 kb on + strand at 3464.426 kb on + strand at 3464.436 kb on + strand at 3464.436 kb on + strand at 3464.437 kb on - strand at 3464.437 kb on - strand at 3464.482 kb on - strand at 3464.482 kb on - strand at 3464.482 kb on - strand at 3464.486 kb on + strand at 3464.487 kb on - strand at 3464.487 kb on - strand at 3464.487 kb on - strand at 3464.487 kb on - strand at 3464.487 kb on - strand at 3464.515 kb on + strand at 3464.515 kb on + strand at 3464.516 kb on - strand at 3464.533 kb on - strand at 3464.533 kb on - strand at 3464.558 kb on + strand at 3464.761 kb on - strand, within RR42_RS16015 at 3464.818 kb on + strand, within RR42_RS16015 at 3465.064 kb on + strand, within RR42_RS16015 at 3465.064 kb on + strand, within RR42_RS16015 at 3465.064 kb on + strand, within RR42_RS16015 at 3465.064 kb on + strand, within RR42_RS16015 at 3465.064 kb on + strand, within RR42_RS16015 at 3465.065 kb on - strand, within RR42_RS16015 at 3465.065 kb on - strand, within RR42_RS16015 at 3465.065 kb on - strand, within RR42_RS16015 at 3465.109 kb on + strand, within RR42_RS16015 at 3465.109 kb on + strand, within RR42_RS16015 at 3465.109 kb on + strand, within RR42_RS16015 at 3465.109 kb on + strand, within RR42_RS16015 at 3465.230 kb on - strand at 3465.262 kb on - strand at 3465.262 kb on - strand at 3465.396 kb on + strand at 3465.425 kb on + strand at 3465.488 kb on + strand at 3465.488 kb on + strand at 3465.489 kb on - strand at 3465.489 kb on - strand at 3465.489 kb on - strand at 3465.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 3,464,315 + -2.9 3,464,345 - +0.5 3,464,352 + -0.6 3,464,352 + -0.4 3,464,353 - +0.3 3,464,353 - +0.3 3,464,353 - -0.4 3,464,388 - -0.1 3,464,426 + +0.0 3,464,426 + -1.6 3,464,436 + -0.0 3,464,436 + +1.9 3,464,437 - -0.7 3,464,437 - -0.0 3,464,482 - -1.4 3,464,482 - -0.1 3,464,482 - +0.1 3,464,486 + +0.4 3,464,487 - +0.5 3,464,487 - +0.4 3,464,487 - +0.2 3,464,487 - -1.1 3,464,487 - -1.6 3,464,515 + -0.1 3,464,515 + -0.3 3,464,516 - -0.3 3,464,533 - -0.7 3,464,533 - -0.6 3,464,558 + -0.0 3,464,761 - RR42_RS16015 0.22 -1.0 3,464,818 + RR42_RS16015 0.31 -1.3 3,465,064 + RR42_RS16015 0.70 +1.3 3,465,064 + RR42_RS16015 0.70 -0.6 3,465,064 + RR42_RS16015 0.70 +0.1 3,465,064 + RR42_RS16015 0.70 -0.6 3,465,064 + RR42_RS16015 0.70 -0.6 3,465,065 - RR42_RS16015 0.70 -0.3 3,465,065 - RR42_RS16015 0.70 +1.1 3,465,065 - RR42_RS16015 0.70 +1.2 3,465,109 + RR42_RS16015 0.77 -0.2 3,465,109 + RR42_RS16015 0.77 -0.9 3,465,109 + RR42_RS16015 0.77 -1.4 3,465,109 + RR42_RS16015 0.77 +1.1 3,465,230 - -1.7 3,465,262 - +0.5 3,465,262 - -0.1 3,465,396 + -2.5 3,465,425 + +0.2 3,465,488 + +0.9 3,465,488 + -0.6 3,465,489 - +0.2 3,465,489 - -0.5 3,465,489 - +0.9 3,465,493 + -1.2
Or see this region's nucleotide sequence