Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09410 and RR42_RS09415 are separated by 349 nucleotides RR42_RS09415 and RR42_RS09420 are separated by 542 nucleotides
RR42_RS09410: RR42_RS09410 - hypothetical protein, at 1,994,748 to 1,996,640
_RS09410
RR42_RS09415: RR42_RS09415 - allantoate amidohydrolase, at 1,996,990 to 1,998,243
_RS09415
RR42_RS09420: RR42_RS09420 - TetR family transcriptional regulator, at 1,998,786 to 1,999,484
_RS09420
Position (kb) 1996
1997
1998
1999 Strain fitness (log2 ratio) -1
0
1 at 1996.040 kb on - strand, within RR42_RS09410 at 1996.061 kb on - strand, within RR42_RS09410 at 1996.061 kb on - strand, within RR42_RS09410 at 1996.138 kb on + strand, within RR42_RS09410 at 1996.239 kb on - strand, within RR42_RS09410 at 1996.366 kb on + strand, within RR42_RS09410 at 1996.367 kb on - strand, within RR42_RS09410 at 1996.581 kb on - strand at 1996.605 kb on - strand at 1996.712 kb on - strand at 1996.951 kb on + strand at 1996.952 kb on - strand at 1997.661 kb on + strand, within RR42_RS09415 at 1997.661 kb on + strand, within RR42_RS09415 at 1997.662 kb on - strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.840 kb on + strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1997.841 kb on - strand, within RR42_RS09415 at 1998.119 kb on + strand at 1998.119 kb on + strand at 1998.150 kb on - strand at 1998.424 kb on - strand at 1998.424 kb on - strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.553 kb on + strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.554 kb on - strand at 1998.564 kb on + strand at 1998.564 kb on + strand at 1998.565 kb on - strand at 1998.565 kb on - strand at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.140 kb on + strand, within RR42_RS09420 at 1999.141 kb on - strand, within RR42_RS09420
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 1,996,040 - RR42_RS09410 0.68 +0.3 1,996,061 - RR42_RS09410 0.69 -0.2 1,996,061 - RR42_RS09410 0.69 -0.1 1,996,138 + RR42_RS09410 0.73 -0.1 1,996,239 - RR42_RS09410 0.79 -0.2 1,996,366 + RR42_RS09410 0.85 +0.6 1,996,367 - RR42_RS09410 0.86 +0.4 1,996,581 - +0.5 1,996,605 - -0.9 1,996,712 - -0.3 1,996,951 + -0.2 1,996,952 - +0.9 1,997,661 + RR42_RS09415 0.54 -0.2 1,997,661 + RR42_RS09415 0.54 -0.4 1,997,662 - RR42_RS09415 0.54 -0.7 1,997,840 + RR42_RS09415 0.68 -0.5 1,997,840 + RR42_RS09415 0.68 -0.1 1,997,840 + RR42_RS09415 0.68 -0.6 1,997,840 + RR42_RS09415 0.68 -0.8 1,997,840 + RR42_RS09415 0.68 -0.0 1,997,840 + RR42_RS09415 0.68 -1.0 1,997,840 + RR42_RS09415 0.68 +0.7 1,997,840 + RR42_RS09415 0.68 -0.5 1,997,840 + RR42_RS09415 0.68 -0.6 1,997,841 - RR42_RS09415 0.68 -0.8 1,997,841 - RR42_RS09415 0.68 +1.4 1,997,841 - RR42_RS09415 0.68 +1.2 1,997,841 - RR42_RS09415 0.68 +0.6 1,998,119 + +0.0 1,998,119 + +1.1 1,998,150 - -0.7 1,998,424 - -1.0 1,998,424 - -0.3 1,998,553 + +0.5 1,998,553 + -0.2 1,998,553 + -0.2 1,998,554 - -0.5 1,998,554 - -1.1 1,998,554 - -0.1 1,998,554 - +0.2 1,998,554 - +0.7 1,998,564 + -0.6 1,998,564 + -0.4 1,998,565 - +0.1 1,998,565 - +0.5 1,999,140 + RR42_RS09420 0.51 -0.5 1,999,140 + RR42_RS09420 0.51 -0.5 1,999,140 + RR42_RS09420 0.51 -1.0 1,999,141 - RR42_RS09420 0.51 +1.2
Or see this region's nucleotide sequence