Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03875 and RR42_RS03880 are separated by 47 nucleotides RR42_RS03880 and RR42_RS03885 overlap by 1 nucleotides RR42_RS03885 and RR42_RS03890 overlap by 8 nucleotides RR42_RS03890 and RR42_RS03895 overlap by 4 nucleotides
RR42_RS03875: RR42_RS03875 - nucleoside 2-deoxyribosyltransferase, at 855,428 to 855,976
_RS03875
RR42_RS03880: RR42_RS03880 - hypothetical protein, at 856,024 to 856,680
_RS03880
RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311
_RS03885
RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038
_RS03890
RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667
_RS03895
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -2
-1
0
1 at 856.014 kb on + strand at 856.298 kb on + strand, within RR42_RS03880 at 856.667 kb on - strand at 856.947 kb on + strand, within RR42_RS03885 at 857.129 kb on - strand, within RR42_RS03885 at 857.201 kb on + strand, within RR42_RS03885 at 857.260 kb on + strand, within RR42_RS03885 at 857.261 kb on - strand, within RR42_RS03885 at 857.309 kb on - strand, within RR42_RS03885 at 857.338 kb on - strand, within RR42_RS03885 at 857.733 kb on + strand, within RR42_RS03885 at 857.744 kb on - strand, within RR42_RS03885 at 857.746 kb on + strand, within RR42_RS03885 at 857.747 kb on - strand, within RR42_RS03885 at 857.895 kb on - strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.897 kb on - strand, within RR42_RS03885 at 858.300 kb on + strand at 858.301 kb on - strand at 858.318 kb on + strand at 858.319 kb on - strand at 858.319 kb on - strand at 858.515 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.662 kb on - strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.666 kb on - strand, within RR42_RS03890 at 858.750 kb on - strand, within RR42_RS03890 at 859.300 kb on + strand, within RR42_RS03895 at 859.301 kb on - strand, within RR42_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 856,014 + -0.3 856,298 + RR42_RS03880 0.42 +1.5 856,667 - +0.4 856,947 + RR42_RS03885 0.16 -0.3 857,129 - RR42_RS03885 0.28 -0.3 857,201 + RR42_RS03885 0.32 -0.4 857,260 + RR42_RS03885 0.36 +0.2 857,261 - RR42_RS03885 0.36 +0.6 857,309 - RR42_RS03885 0.39 +0.8 857,338 - RR42_RS03885 0.40 -2.1 857,733 + RR42_RS03885 0.65 +0.5 857,744 - RR42_RS03885 0.65 +0.1 857,746 + RR42_RS03885 0.65 -0.1 857,747 - RR42_RS03885 0.65 +0.2 857,895 - RR42_RS03885 0.74 -0.2 857,896 + RR42_RS03885 0.75 +0.3 857,896 + RR42_RS03885 0.75 -0.2 857,897 - RR42_RS03885 0.75 +0.3 858,300 + +0.2 858,301 - +0.1 858,318 + +0.9 858,319 - -0.2 858,319 - -0.0 858,515 + RR42_RS03890 0.29 -0.6 858,661 + RR42_RS03890 0.49 -1.4 858,661 + RR42_RS03890 0.49 -1.5 858,662 - RR42_RS03890 0.49 -0.2 858,665 + RR42_RS03890 0.49 -0.7 858,665 + RR42_RS03890 0.49 +0.8 858,665 + RR42_RS03890 0.49 -0.0 858,666 - RR42_RS03890 0.49 -1.0 858,750 - RR42_RS03890 0.61 -0.2 859,300 + RR42_RS03895 0.42 +0.8 859,301 - RR42_RS03895 0.42 -0.5
Or see this region's nucleotide sequence