Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03480

Experiment: R2A with Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03475 and RR42_RS03480 are separated by 153 nucleotidesRR42_RS03480 and RR42_RS03485 are separated by 202 nucleotides RR42_RS03475: RR42_RS03475 - exodeoxyribonuclease VII large subunit, at 771,221 to 772,606 _RS03475 RR42_RS03480: RR42_RS03480 - superoxide dismutase, at 772,760 to 773,341 _RS03480 RR42_RS03485: RR42_RS03485 - type VI secretion protein, at 773,544 to 774,581 _RS03485 Position (kb) 772 773 774Strain fitness (log2 ratio) -2 -1 0 1 2at 771.787 kb on - strand, within RR42_RS03475at 772.066 kb on + strand, within RR42_RS03475at 772.066 kb on + strand, within RR42_RS03475at 772.066 kb on + strand, within RR42_RS03475at 772.067 kb on - strand, within RR42_RS03475at 772.067 kb on - strand, within RR42_RS03475at 772.463 kb on + strand, within RR42_RS03475at 772.464 kb on - strand, within RR42_RS03475at 772.605 kb on - strandat 772.657 kb on + strandat 772.657 kb on + strandat 772.657 kb on + strandat 772.658 kb on - strandat 772.658 kb on - strandat 772.658 kb on - strandat 772.661 kb on - strandat 772.661 kb on - strandat 773.357 kb on + strandat 773.477 kb on - strandat 773.499 kb on - strandat 773.646 kb on + strandat 773.646 kb on + strandat 773.945 kb on - strand, within RR42_RS03485

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml
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771,787 - RR42_RS03475 0.41 -1.1
772,066 + RR42_RS03475 0.61 -1.3
772,066 + RR42_RS03475 0.61 -2.0
772,066 + RR42_RS03475 0.61 -0.1
772,067 - RR42_RS03475 0.61 -0.1
772,067 - RR42_RS03475 0.61 -0.9
772,463 + RR42_RS03475 0.90 -0.3
772,464 - RR42_RS03475 0.90 -0.3
772,605 - +0.1
772,657 + -0.5
772,657 + -0.3
772,657 + +0.4
772,658 - +2.2
772,658 - -1.3
772,658 - -0.5
772,661 - +0.5
772,661 - -1.6
773,357 + +0.0
773,477 - -0.3
773,499 - +1.0
773,646 + -0.4
773,646 + -0.4
773,945 - RR42_RS03485 0.39 +0.1

Or see this region's nucleotide sequence