Experiment: R2A with Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides RR42_RS02910 and RR42_RS02915 are separated by 220 nucleotides
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
RR42_RS02915: RR42_RS02915 - hypothetical protein, at 650,435 to 651,466
_RS02915
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -1
0
1
2 at 648.024 kb on - strand at 648.201 kb on + strand, within RR42_RS02905 at 648.201 kb on + strand, within RR42_RS02905 at 648.252 kb on + strand, within RR42_RS02905 at 648.388 kb on - strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.505 kb on - strand, within RR42_RS02905 at 648.566 kb on + strand, within RR42_RS02905 at 648.624 kb on - strand, within RR42_RS02905 at 649.045 kb on + strand at 649.046 kb on - strand at 649.171 kb on + strand, within RR42_RS02910 at 649.690 kb on + strand, within RR42_RS02910 at 649.888 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.248 kb on - strand at 650.364 kb on + strand at 650.364 kb on + strand at 650.365 kb on - strand at 650.365 kb on - strand at 650.368 kb on + strand at 650.368 kb on + strand at 650.369 kb on - strand at 650.369 kb on - strand at 650.369 kb on - strand at 650.403 kb on + strand at 650.426 kb on + strand at 650.682 kb on - strand, within RR42_RS02915 at 650.682 kb on - strand, within RR42_RS02915 at 650.682 kb on - strand, within RR42_RS02915 at 650.750 kb on - strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.966 kb on + strand, within RR42_RS02915 at 650.966 kb on + strand, within RR42_RS02915 at 650.967 kb on - strand, within RR42_RS02915 at 650.976 kb on + strand, within RR42_RS02915 at 651.056 kb on + strand, within RR42_RS02915
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Bacitracin 0.5 mg/ml remove 648,024 - -0.1 648,201 + RR42_RS02905 0.27 +0.9 648,201 + RR42_RS02905 0.27 +0.2 648,252 + RR42_RS02905 0.32 +0.4 648,388 - RR42_RS02905 0.46 +0.2 648,504 + RR42_RS02905 0.57 +0.3 648,504 + RR42_RS02905 0.57 +1.8 648,504 + RR42_RS02905 0.57 -0.6 648,505 - RR42_RS02905 0.57 +0.4 648,566 + RR42_RS02905 0.64 -0.3 648,624 - RR42_RS02905 0.69 +0.4 649,045 + +0.1 649,046 - +0.2 649,171 + RR42_RS02910 0.17 +0.1 649,690 + RR42_RS02910 0.58 +0.2 649,888 + RR42_RS02910 0.74 -0.4 650,050 + RR42_RS02910 0.87 +0.1 650,050 + RR42_RS02910 0.87 -0.7 650,050 + RR42_RS02910 0.87 +0.7 650,050 + RR42_RS02910 0.87 -0.2 650,050 + RR42_RS02910 0.87 +0.3 650,050 + RR42_RS02910 0.87 +0.3 650,050 + RR42_RS02910 0.87 +1.1 650,051 - RR42_RS02910 0.87 +0.2 650,051 - RR42_RS02910 0.87 -0.2 650,051 - RR42_RS02910 0.87 +0.3 650,051 - RR42_RS02910 0.87 +0.9 650,051 - RR42_RS02910 0.87 +0.4 650,051 - RR42_RS02910 0.87 +0.1 650,248 - -0.2 650,364 + -0.5 650,364 + +0.2 650,365 - -0.6 650,365 - +0.6 650,368 + +0.7 650,368 + +1.0 650,369 - +0.4 650,369 - +1.0 650,369 - +1.4 650,403 + -0.3 650,426 + +0.3 650,682 - RR42_RS02915 0.24 -0.1 650,682 - RR42_RS02915 0.24 +0.7 650,682 - RR42_RS02915 0.24 +0.9 650,750 - RR42_RS02915 0.31 +0.3 650,788 + RR42_RS02915 0.34 -0.1 650,788 + RR42_RS02915 0.34 +1.0 650,788 + RR42_RS02915 0.34 +0.1 650,966 + RR42_RS02915 0.51 +0.0 650,966 + RR42_RS02915 0.51 -1.1 650,967 - RR42_RS02915 0.52 +0.7 650,976 + RR42_RS02915 0.52 -0.1 651,056 + RR42_RS02915 0.60 +0.4
Or see this region's nucleotide sequence