Strain Fitness in Dechlorosoma suillum PS around Dsui_3065

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3064 and Dsui_3065 are separated by 3 nucleotidesDsui_3065 and Dsui_3066 are separated by 247 nucleotides Dsui_3064: Dsui_3064 - carbamoyl-phosphate synthase, large subunit, at 3,278,213 to 3,281,419 _3064 Dsui_3065: Dsui_3065 - carbamoyl-phosphate synthase, small subunit, at 3,281,423 to 3,282,571 _3065 Dsui_3066: Dsui_3066 - dihydrodipicolinate reductase, at 3,282,819 to 3,283,625 _3066 Position (kb) 3281 3282 3283Strain fitness (log2 ratio) -2 -1 0 1at 3281.430 kb on - strandat 3282.740 kb on - strandat 3282.783 kb on + strandat 3282.783 kb on + strandat 3283.056 kb on + strand, within Dsui_3066at 3283.056 kb on + strand, within Dsui_3066at 3283.099 kb on - strand, within Dsui_3066at 3283.119 kb on - strand, within Dsui_3066at 3283.252 kb on - strand, within Dsui_3066at 3283.421 kb on + strandat 3283.429 kb on - strand, within Dsui_3066at 3283.429 kb on - strand, within Dsui_3066at 3283.459 kb on + strandat 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.467 kb on - strand, within Dsui_3066at 3283.550 kb on + strandat 3283.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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3,281,430 - +0.4
3,282,740 - +0.1
3,282,783 + -0.0
3,282,783 + +1.0
3,283,056 + Dsui_3066 0.29 -0.6
3,283,056 + Dsui_3066 0.29 -0.0
3,283,099 - Dsui_3066 0.35 +0.2
3,283,119 - Dsui_3066 0.37 +0.2
3,283,252 - Dsui_3066 0.54 +0.2
3,283,421 + +1.0
3,283,429 - Dsui_3066 0.76 +0.4
3,283,429 - Dsui_3066 0.76 +0.4
3,283,459 + +1.0
3,283,467 - Dsui_3066 0.80 +0.2
3,283,467 - Dsui_3066 0.80 +1.1
3,283,467 - Dsui_3066 0.80 -0.1
3,283,467 - Dsui_3066 0.80 -0.5
3,283,550 + -2.0
3,283,550 + -1.0

Or see this region's nucleotide sequence