Strain Fitness in Dechlorosoma suillum PS around Dsui_3034

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3033 and Dsui_3034 are separated by 372 nucleotidesDsui_3034 and Dsui_3035 are separated by 116 nucleotides Dsui_3033: Dsui_3033 - acetate kinase, at 3,245,257 to 3,246,450 _3033 Dsui_3034: Dsui_3034 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 3,246,823 to 3,249,732 _3034 Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012 _3035 Position (kb) 3246 3247 3248 3249 3250Strain fitness (log2 ratio) -1 0 1at 3245.874 kb on - strand, within Dsui_3033at 3245.889 kb on - strand, within Dsui_3033at 3245.935 kb on + strand, within Dsui_3033at 3246.241 kb on - strand, within Dsui_3033at 3246.299 kb on + strand, within Dsui_3033at 3246.364 kb on + strandat 3246.372 kb on - strandat 3246.428 kb on + strandat 3246.446 kb on - strandat 3246.507 kb on - strandat 3246.558 kb on - strandat 3246.563 kb on - strandat 3246.564 kb on - strandat 3246.570 kb on + strandat 3246.693 kb on - strandat 3247.108 kb on + strandat 3247.111 kb on - strandat 3247.143 kb on + strand, within Dsui_3034at 3247.167 kb on - strand, within Dsui_3034at 3247.269 kb on + strand, within Dsui_3034at 3247.277 kb on - strand, within Dsui_3034at 3247.277 kb on - strand, within Dsui_3034at 3247.428 kb on + strand, within Dsui_3034at 3247.436 kb on - strand, within Dsui_3034at 3247.436 kb on - strand, within Dsui_3034at 3247.496 kb on - strandat 3247.588 kb on - strandat 3247.697 kb on + strand, within Dsui_3034at 3247.705 kb on - strand, within Dsui_3034at 3247.724 kb on - strand, within Dsui_3034at 3247.731 kb on + strand, within Dsui_3034at 3247.787 kb on + strand, within Dsui_3034at 3247.814 kb on + strand, within Dsui_3034at 3247.864 kb on + strand, within Dsui_3034at 3247.989 kb on - strand, within Dsui_3034at 3247.991 kb on + strand, within Dsui_3034at 3248.013 kb on + strand, within Dsui_3034at 3248.063 kb on + strand, within Dsui_3034at 3248.068 kb on + strand, within Dsui_3034at 3248.068 kb on - strand, within Dsui_3034at 3248.123 kb on - strand, within Dsui_3034at 3248.125 kb on + strand, within Dsui_3034at 3248.162 kb on + strand, within Dsui_3034at 3248.200 kb on - strand, within Dsui_3034at 3248.350 kb on + strand, within Dsui_3034at 3248.358 kb on - strand, within Dsui_3034at 3248.387 kb on - strand, within Dsui_3034at 3248.459 kb on - strand, within Dsui_3034at 3248.460 kb on + strand, within Dsui_3034at 3248.475 kb on - strand, within Dsui_3034at 3248.489 kb on - strand, within Dsui_3034at 3248.547 kb on + strand, within Dsui_3034at 3248.644 kb on + strand, within Dsui_3034at 3248.644 kb on + strand, within Dsui_3034at 3248.644 kb on + strand, within Dsui_3034at 3248.652 kb on - strand, within Dsui_3034at 3248.880 kb on + strand, within Dsui_3034at 3248.888 kb on - strand, within Dsui_3034at 3248.909 kb on + strand, within Dsui_3034at 3248.917 kb on - strand, within Dsui_3034at 3248.917 kb on - strandat 3249.066 kb on + strand, within Dsui_3034at 3249.094 kb on + strand, within Dsui_3034at 3249.102 kb on - strand, within Dsui_3034at 3249.123 kb on + strand, within Dsui_3034at 3249.268 kb on - strand, within Dsui_3034at 3249.293 kb on - strand, within Dsui_3034at 3249.404 kb on + strand, within Dsui_3034at 3249.431 kb on + strand, within Dsui_3034at 3249.439 kb on + strand, within Dsui_3034at 3249.604 kb on + strandat 3249.728 kb on + strandat 3249.759 kb on + strandat 3249.798 kb on + strandat 3249.806 kb on - strandat 3249.984 kb on - strand, within Dsui_3035at 3250.014 kb on - strand, within Dsui_3035at 3250.061 kb on + strand, within Dsui_3035at 3250.061 kb on + strand, within Dsui_3035at 3250.120 kb on + strand, within Dsui_3035at 3250.338 kb on - strand, within Dsui_3035at 3250.376 kb on + strand, within Dsui_3035at 3250.457 kb on + strand, within Dsui_3035at 3250.476 kb on - strand, within Dsui_3035at 3250.487 kb on + strand, within Dsui_3035at 3250.649 kb on + strand, within Dsui_3035at 3250.649 kb on + strand, within Dsui_3035at 3250.657 kb on - strand, within Dsui_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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3,245,874 - Dsui_3033 0.52 -1.0
3,245,889 - Dsui_3033 0.53 +1.0
3,245,935 + Dsui_3033 0.57 +1.0
3,246,241 - Dsui_3033 0.82 +1.0
3,246,299 + Dsui_3033 0.87 +0.8
3,246,364 + -0.2
3,246,372 - -0.6
3,246,428 + +0.6
3,246,446 - +1.0
3,246,507 - +1.0
3,246,558 - +1.0
3,246,563 - +1.0
3,246,564 - -1.3
3,246,570 + -0.6
3,246,693 - +1.0
3,247,108 + -0.1
3,247,111 - -0.0
3,247,143 + Dsui_3034 0.11 -0.9
3,247,167 - Dsui_3034 0.12 +1.0
3,247,269 + Dsui_3034 0.15 -0.4
3,247,277 - Dsui_3034 0.16 -1.3
3,247,277 - Dsui_3034 0.16 -1.3
3,247,428 + Dsui_3034 0.21 -0.7
3,247,436 - Dsui_3034 0.21 -0.6
3,247,436 - Dsui_3034 0.21 -0.6
3,247,496 - +1.0
3,247,588 - +1.0
3,247,697 + Dsui_3034 0.30 -0.6
3,247,705 - Dsui_3034 0.30 -0.0
3,247,724 - Dsui_3034 0.31 +1.0
3,247,731 + Dsui_3034 0.31 -0.6
3,247,787 + Dsui_3034 0.33 -1.2
3,247,814 + Dsui_3034 0.34 -0.4
3,247,864 + Dsui_3034 0.36 -0.4
3,247,989 - Dsui_3034 0.40 -0.0
3,247,991 + Dsui_3034 0.40 -1.6
3,248,013 + Dsui_3034 0.41 -0.6
3,248,063 + Dsui_3034 0.43 -0.4
3,248,068 + Dsui_3034 0.43 -0.5
3,248,068 - Dsui_3034 0.43 -1.0
3,248,123 - Dsui_3034 0.45 -0.6
3,248,125 + Dsui_3034 0.45 -0.9
3,248,162 + Dsui_3034 0.46 -1.2
3,248,200 - Dsui_3034 0.47 -0.0
3,248,350 + Dsui_3034 0.52 -0.7
3,248,358 - Dsui_3034 0.53 -1.0
3,248,387 - Dsui_3034 0.54 -0.0
3,248,459 - Dsui_3034 0.56 +1.0
3,248,460 + Dsui_3034 0.56 -0.0
3,248,475 - Dsui_3034 0.57 +1.0
3,248,489 - Dsui_3034 0.57 -0.0
3,248,547 + Dsui_3034 0.59 -0.9
3,248,644 + Dsui_3034 0.63 -0.5
3,248,644 + Dsui_3034 0.63 -0.3
3,248,644 + Dsui_3034 0.63 -0.8
3,248,652 - Dsui_3034 0.63 +1.0
3,248,880 + Dsui_3034 0.71 -0.0
3,248,888 - Dsui_3034 0.71 -1.3
3,248,909 + Dsui_3034 0.72 +0.0
3,248,917 - Dsui_3034 0.72 -1.0
3,248,917 - +1.0
3,249,066 + Dsui_3034 0.77 -0.1
3,249,094 + Dsui_3034 0.78 -0.6
3,249,102 - Dsui_3034 0.78 +1.0
3,249,123 + Dsui_3034 0.79 -0.7
3,249,268 - Dsui_3034 0.84 -0.0
3,249,293 - Dsui_3034 0.85 +1.0
3,249,404 + Dsui_3034 0.89 -0.6
3,249,431 + Dsui_3034 0.90 -0.9
3,249,439 + Dsui_3034 0.90 -0.6
3,249,604 + -0.5
3,249,728 + -0.2
3,249,759 + -0.1
3,249,798 + +0.2
3,249,806 - -1.0
3,249,984 - Dsui_3035 0.12 -0.6
3,250,014 - Dsui_3035 0.14 -0.6
3,250,061 + Dsui_3035 0.18 +0.2
3,250,061 + Dsui_3035 0.18 -0.2
3,250,120 + Dsui_3035 0.23 -0.1
3,250,338 - Dsui_3035 0.42 +1.0
3,250,376 + Dsui_3035 0.45 +0.3
3,250,457 + Dsui_3035 0.52 -0.1
3,250,476 - Dsui_3035 0.54 +1.0
3,250,487 + Dsui_3035 0.55 -0.5
3,250,649 + Dsui_3035 0.69 +0.2
3,250,649 + Dsui_3035 0.69 -0.2
3,250,657 - Dsui_3035 0.69 -0.6

Or see this region's nucleotide sequence