Strain Fitness in Dechlorosoma suillum PS around Dsui_3006

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3004 and Dsui_3005 are separated by 11 nucleotidesDsui_3005 and Dsui_3006 are separated by 136 nucleotidesDsui_3006 and Dsui_3007 are separated by 4 nucleotidesDsui_3007 and Dsui_3008 overlap by 1 nucleotidesDsui_3008 and Dsui_3009 are separated by 128 nucleotides Dsui_3004: Dsui_3004 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,217,040 to 3,219,646 _3004 Dsui_3005: Dsui_3005 - transcription elongation factor GreB, at 3,219,658 to 3,220,215 _3005 Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969 _3006 Dsui_3007: Dsui_3007 - hydrogenase assembly chaperone HypC/HupF, at 3,220,974 to 3,221,261 _3007 Dsui_3008: Dsui_3008 - hydrogenase expression/formation protein, at 3,221,261 to 3,221,761 _3008 Dsui_3009: Dsui_3009 - Ni,Fe-hydrogenase I large subunit, at 3,221,890 to 3,223,602 _3009 Position (kb) 3220 3221Strain fitness (log2 ratio) -2 -1 0 1at 3219.413 kb on - strandat 3219.434 kb on - strandat 3219.581 kb on + strandat 3219.589 kb on - strandat 3219.589 kb on - strandat 3219.771 kb on - strand, within Dsui_3005at 3219.771 kb on - strand, within Dsui_3005at 3219.989 kb on - strand, within Dsui_3005at 3220.047 kb on - strand, within Dsui_3005at 3220.047 kb on - strand, within Dsui_3005at 3220.127 kb on - strand, within Dsui_3005at 3220.132 kb on - strand, within Dsui_3005at 3220.186 kb on + strandat 3220.205 kb on + strandat 3220.417 kb on - strand, within Dsui_3006at 3220.615 kb on - strand, within Dsui_3006at 3221.107 kb on - strand, within Dsui_3007at 3221.137 kb on + strandat 3221.246 kb on - strandat 3221.416 kb on - strand, within Dsui_3008at 3221.445 kb on - strand, within Dsui_3008at 3221.590 kb on - strand, within Dsui_3008at 3221.616 kb on - strand, within Dsui_3008at 3221.657 kb on + strand, within Dsui_3008at 3221.700 kb on - strandat 3221.700 kb on - strand, within Dsui_3008at 3221.707 kb on - strand, within Dsui_3008at 3221.757 kb on - strandat 3221.953 kb on - strandat 3221.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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3,219,413 - -0.3
3,219,434 - +0.4
3,219,581 + -0.6
3,219,589 - -0.1
3,219,589 - -0.1
3,219,771 - Dsui_3005 0.20 -0.6
3,219,771 - Dsui_3005 0.20 -0.7
3,219,989 - Dsui_3005 0.59 -1.3
3,220,047 - Dsui_3005 0.70 -0.4
3,220,047 - Dsui_3005 0.70 -0.1
3,220,127 - Dsui_3005 0.84 -0.5
3,220,132 - Dsui_3005 0.85 +0.5
3,220,186 + +1.0
3,220,205 + -1.0
3,220,417 - Dsui_3006 0.11 -1.6
3,220,615 - Dsui_3006 0.43 -1.0
3,221,107 - Dsui_3007 0.46 -2.0
3,221,137 + +1.0
3,221,246 - +1.0
3,221,416 - Dsui_3008 0.31 +0.0
3,221,445 - Dsui_3008 0.37 -1.0
3,221,590 - Dsui_3008 0.66 -1.3
3,221,616 - Dsui_3008 0.71 -0.6
3,221,657 + Dsui_3008 0.79 +0.0
3,221,700 - +0.0
3,221,700 - Dsui_3008 0.88 -1.0
3,221,707 - Dsui_3008 0.89 +0.0
3,221,757 - +1.0
3,221,953 - +0.0
3,221,969 - +0.0

Or see this region's nucleotide sequence