Strain Fitness in Dechlorosoma suillum PS around Dsui_2681

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2679 and Dsui_2680 are separated by 3 nucleotidesDsui_2680 and Dsui_2681 overlap by 20 nucleotidesDsui_2681 and Dsui_2682 are separated by 4 nucleotidesDsui_2682 and Dsui_2683 are separated by 4 nucleotides Dsui_2679: Dsui_2679 - rRNA methylase, at 2,831,642 to 2,832,418 _2679 Dsui_2680: Dsui_2680 - ribonuclease HII, at 2,832,422 to 2,833,018 _2680 Dsui_2681: Dsui_2681 - lipid-A-disaccharide synthase, at 2,832,999 to 2,834,186 _2681 Dsui_2682: Dsui_2682 - acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase, at 2,834,191 to 2,834,961 _2682 Dsui_2683: Dsui_2683 - beta-hydroxyacyl-(acyl carrier protein) dehydratase FabZ, at 2,834,966 to 2,835,403 _2683 Position (kb) 2832 2833 2834 2835Strain fitness (log2 ratio) -1 0 1at 2832.060 kb on + strand, within Dsui_2679at 2832.062 kb on + strand, within Dsui_2679at 2832.114 kb on + strand, within Dsui_2679at 2832.179 kb on + strand, within Dsui_2679at 2832.179 kb on + strand, within Dsui_2679at 2832.187 kb on - strand, within Dsui_2679at 2832.201 kb on - strand, within Dsui_2679at 2832.234 kb on + strand, within Dsui_2679at 2832.247 kb on - strand, within Dsui_2679at 2832.347 kb on + strandat 2832.420 kb on + strandat 2832.420 kb on + strandat 2832.428 kb on - strandat 2832.443 kb on - strandat 2832.460 kb on + strandat 2832.492 kb on - strand, within Dsui_2680at 2832.523 kb on + strand, within Dsui_2680at 2832.544 kb on + strand, within Dsui_2680at 2832.585 kb on - strand, within Dsui_2680at 2832.611 kb on - strand, within Dsui_2680at 2832.651 kb on + strand, within Dsui_2680at 2832.659 kb on - strand, within Dsui_2680at 2832.814 kb on - strand, within Dsui_2680at 2832.859 kb on - strand, within Dsui_2680at 2832.911 kb on - strand, within Dsui_2680

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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2,832,060 + Dsui_2679 0.54 +1.0
2,832,062 + Dsui_2679 0.54 -0.6
2,832,114 + Dsui_2679 0.61 +1.0
2,832,179 + Dsui_2679 0.69 +1.0
2,832,179 + Dsui_2679 0.69 -0.6
2,832,187 - Dsui_2679 0.70 +0.0
2,832,201 - Dsui_2679 0.72 +0.4
2,832,234 + Dsui_2679 0.76 -0.6
2,832,247 - Dsui_2679 0.78 +0.2
2,832,347 + -1.3
2,832,420 + -0.0
2,832,420 + +1.0
2,832,428 - +0.1
2,832,443 - +0.1
2,832,460 + +1.0
2,832,492 - Dsui_2680 0.12 +0.2
2,832,523 + Dsui_2680 0.17 +1.0
2,832,544 + Dsui_2680 0.20 -1.0
2,832,585 - Dsui_2680 0.27 -0.8
2,832,611 - Dsui_2680 0.32 -0.2
2,832,651 + Dsui_2680 0.38 -0.6
2,832,659 - Dsui_2680 0.40 -0.4
2,832,814 - Dsui_2680 0.66 +0.5
2,832,859 - Dsui_2680 0.73 -0.1
2,832,911 - Dsui_2680 0.82 -0.1

Or see this region's nucleotide sequence