Strain Fitness in Dechlorosoma suillum PS around Dsui_2000

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1998 and Dsui_1999 are separated by 11 nucleotidesDsui_1999 and Dsui_2000 are separated by 26 nucleotidesDsui_2000 and Dsui_2001 are separated by 27 nucleotides Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474 _1998 Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830 _1999 Dsui_2000: Dsui_2000 - hypothetical protein, at 2,106,857 to 2,107,624 _2000 Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184 _2001 Position (kb) 2106 2107 2108Strain fitness (log2 ratio) -2 -1 0 1at 2106.499 kb on + strandat 2106.515 kb on - strandat 2106.517 kb on - strandat 2106.523 kb on - strand, within Dsui_1999at 2106.588 kb on + strand, within Dsui_1999at 2106.608 kb on - strandat 2106.632 kb on + strandat 2106.687 kb on - strand, within Dsui_1999at 2106.714 kb on + strandat 2106.742 kb on + strand, within Dsui_1999at 2106.787 kb on - strand, within Dsui_1999at 2106.793 kb on - strand, within Dsui_1999at 2106.796 kb on - strandat 2106.854 kb on + strandat 2106.973 kb on - strand, within Dsui_2000at 2107.017 kb on - strand, within Dsui_2000at 2107.048 kb on + strand, within Dsui_2000at 2107.084 kb on + strand, within Dsui_2000at 2107.114 kb on - strand, within Dsui_2000at 2107.153 kb on + strand, within Dsui_2000at 2107.170 kb on - strand, within Dsui_2000at 2107.223 kb on + strandat 2107.239 kb on - strand, within Dsui_2000at 2107.290 kb on - strand, within Dsui_2000at 2107.435 kb on + strand, within Dsui_2000at 2107.443 kb on - strand, within Dsui_2000at 2107.495 kb on - strand, within Dsui_2000at 2107.658 kb on - strandat 2107.701 kb on - strandat 2107.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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2,106,499 + +1.2
2,106,515 - -0.2
2,106,517 - -0.5
2,106,523 - Dsui_1999 0.11 -2.2
2,106,588 + Dsui_1999 0.30 -1.1
2,106,608 - -0.4
2,106,632 + +0.2
2,106,687 - Dsui_1999 0.58 -0.2
2,106,714 + +1.2
2,106,742 + Dsui_1999 0.74 +1.2
2,106,787 - Dsui_1999 0.87 -0.6
2,106,793 - Dsui_1999 0.89 +0.1
2,106,796 - -1.4
2,106,854 + -1.8
2,106,973 - Dsui_2000 0.15 -0.7
2,107,017 - Dsui_2000 0.21 +0.7
2,107,048 + Dsui_2000 0.25 +0.2
2,107,084 + Dsui_2000 0.30 -1.9
2,107,114 - Dsui_2000 0.33 -1.3
2,107,153 + Dsui_2000 0.39 +1.2
2,107,170 - Dsui_2000 0.41 -0.2
2,107,223 + +1.2
2,107,239 - Dsui_2000 0.50 +0.2
2,107,290 - Dsui_2000 0.56 +0.5
2,107,435 + Dsui_2000 0.75 -0.8
2,107,443 - Dsui_2000 0.76 +0.5
2,107,495 - Dsui_2000 0.83 +0.2
2,107,658 - +0.8
2,107,701 - +0.4
2,107,716 - +0.5

Or see this region's nucleotide sequence