Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1998 and Dsui_1999 are separated by 11 nucleotides Dsui_1999 and Dsui_2000 are separated by 26 nucleotides Dsui_2000 and Dsui_2001 are separated by 27 nucleotides
Dsui_1998: Dsui_1998 - glutamate racemase, at 2,105,689 to 2,106,474
_1998
Dsui_1999: Dsui_1999 - putative translation initiation inhibitor, yjgF family, at 2,106,486 to 2,106,830
_1999
Dsui_2000: Dsui_2000 - hypothetical protein, at 2,106,857 to 2,107,624
_2000
Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184
_2001
Position (kb)
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1 at 2106.499 kb on + strand at 2106.515 kb on - strand at 2106.517 kb on - strand at 2106.523 kb on - strand, within Dsui_1999 at 2106.588 kb on + strand, within Dsui_1999 at 2106.608 kb on - strand at 2106.632 kb on + strand at 2106.687 kb on - strand, within Dsui_1999 at 2106.714 kb on + strand at 2106.742 kb on + strand, within Dsui_1999 at 2106.787 kb on - strand, within Dsui_1999 at 2106.793 kb on - strand, within Dsui_1999 at 2106.796 kb on - strand at 2106.854 kb on + strand at 2106.973 kb on - strand, within Dsui_2000 at 2107.017 kb on - strand, within Dsui_2000 at 2107.048 kb on + strand, within Dsui_2000 at 2107.084 kb on + strand, within Dsui_2000 at 2107.114 kb on - strand, within Dsui_2000 at 2107.153 kb on + strand, within Dsui_2000 at 2107.170 kb on - strand, within Dsui_2000 at 2107.223 kb on + strand at 2107.239 kb on - strand, within Dsui_2000 at 2107.290 kb on - strand, within Dsui_2000 at 2107.435 kb on + strand, within Dsui_2000 at 2107.443 kb on - strand, within Dsui_2000 at 2107.495 kb on - strand, within Dsui_2000 at 2107.658 kb on - strand at 2107.701 kb on - strand at 2107.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 2,106,499 + +1.2 2,106,515 - -0.2 2,106,517 - -0.5 2,106,523 - Dsui_1999 0.11 -2.2 2,106,588 + Dsui_1999 0.30 -1.1 2,106,608 - -0.4 2,106,632 + +0.2 2,106,687 - Dsui_1999 0.58 -0.2 2,106,714 + +1.2 2,106,742 + Dsui_1999 0.74 +1.2 2,106,787 - Dsui_1999 0.87 -0.6 2,106,793 - Dsui_1999 0.89 +0.1 2,106,796 - -1.4 2,106,854 + -1.8 2,106,973 - Dsui_2000 0.15 -0.7 2,107,017 - Dsui_2000 0.21 +0.7 2,107,048 + Dsui_2000 0.25 +0.2 2,107,084 + Dsui_2000 0.30 -1.9 2,107,114 - Dsui_2000 0.33 -1.3 2,107,153 + Dsui_2000 0.39 +1.2 2,107,170 - Dsui_2000 0.41 -0.2 2,107,223 + +1.2 2,107,239 - Dsui_2000 0.50 +0.2 2,107,290 - Dsui_2000 0.56 +0.5 2,107,435 + Dsui_2000 0.75 -0.8 2,107,443 - Dsui_2000 0.76 +0.5 2,107,495 - Dsui_2000 0.83 +0.2 2,107,658 - +0.8 2,107,701 - +0.4 2,107,716 - +0.5
Or see this region's nucleotide sequence