Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1980 and Dsui_1981 are separated by 123 nucleotides Dsui_1981 and Dsui_1982 are separated by 170 nucleotides
Dsui_1980: Dsui_1980 - hypothetical protein, at 2,089,275 to 2,089,748
_1980
Dsui_1981: Dsui_1981 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 2,089,872 to 2,091,167
_1981
Dsui_1982: Dsui_1982 - sulfate adenylyltransferase, large subunit, at 2,091,338 to 2,092,612
_1982
Position (kb)
2089
2090
2091
2092 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2089.161 kb on - strand at 2089.179 kb on + strand at 2089.234 kb on - strand at 2089.234 kb on - strand at 2089.289 kb on + strand at 2089.311 kb on - strand at 2089.350 kb on - strand, within Dsui_1980 at 2089.350 kb on - strand, within Dsui_1980 at 2089.410 kb on + strand, within Dsui_1980 at 2089.471 kb on - strand, within Dsui_1980 at 2089.482 kb on - strand, within Dsui_1980 at 2089.549 kb on - strand at 2089.569 kb on + strand at 2089.570 kb on - strand, within Dsui_1980 at 2089.610 kb on + strand, within Dsui_1980 at 2089.627 kb on - strand, within Dsui_1980 at 2089.639 kb on + strand, within Dsui_1980 at 2089.662 kb on - strand, within Dsui_1980 at 2089.674 kb on - strand, within Dsui_1980 at 2089.698 kb on + strand, within Dsui_1980 at 2089.752 kb on - strand at 2089.763 kb on - strand at 2089.773 kb on - strand at 2089.784 kb on + strand at 2089.875 kb on - strand at 2089.876 kb on - strand at 2089.876 kb on - strand at 2089.923 kb on + strand at 2089.939 kb on - strand at 2089.966 kb on + strand at 2090.011 kb on + strand, within Dsui_1981 at 2090.024 kb on - strand, within Dsui_1981 at 2090.026 kb on + strand, within Dsui_1981 at 2090.029 kb on - strand at 2090.029 kb on - strand at 2090.029 kb on - strand, within Dsui_1981 at 2090.039 kb on - strand, within Dsui_1981 at 2090.124 kb on - strand, within Dsui_1981 at 2090.185 kb on - strand, within Dsui_1981 at 2090.193 kb on + strand, within Dsui_1981 at 2090.201 kb on + strand, within Dsui_1981 at 2090.207 kb on + strand, within Dsui_1981 at 2090.225 kb on - strand, within Dsui_1981 at 2090.446 kb on + strand, within Dsui_1981 at 2090.472 kb on - strand, within Dsui_1981 at 2090.543 kb on + strand, within Dsui_1981 at 2090.543 kb on + strand, within Dsui_1981 at 2090.551 kb on - strand, within Dsui_1981 at 2090.564 kb on - strand, within Dsui_1981 at 2090.564 kb on - strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.587 kb on + strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.595 kb on - strand, within Dsui_1981 at 2090.596 kb on + strand, within Dsui_1981 at 2090.597 kb on + strand, within Dsui_1981 at 2090.706 kb on - strand, within Dsui_1981 at 2090.739 kb on - strand, within Dsui_1981 at 2090.758 kb on + strand, within Dsui_1981 at 2090.822 kb on + strand, within Dsui_1981 at 2090.900 kb on - strand, within Dsui_1981 at 2090.989 kb on - strand at 2091.002 kb on - strand, within Dsui_1981 at 2091.007 kb on - strand, within Dsui_1981 at 2091.058 kb on + strand at 2091.061 kb on - strand at 2091.066 kb on - strand at 2091.119 kb on + strand at 2091.135 kb on - strand at 2091.142 kb on + strand at 2091.150 kb on - strand at 2091.228 kb on + strand at 2091.241 kb on + strand at 2091.339 kb on - strand at 2091.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 2,089,161 - -2.9 2,089,179 + +1.2 2,089,234 - -0.8 2,089,234 - +1.2 2,089,289 + +0.2 2,089,311 - +0.2 2,089,350 - Dsui_1980 0.16 +1.2 2,089,350 - Dsui_1980 0.16 -0.8 2,089,410 + Dsui_1980 0.28 +1.2 2,089,471 - Dsui_1980 0.41 +1.2 2,089,482 - Dsui_1980 0.44 -1.1 2,089,549 - +0.2 2,089,569 + +1.2 2,089,570 - Dsui_1980 0.62 +0.2 2,089,610 + Dsui_1980 0.71 +1.2 2,089,627 - Dsui_1980 0.74 +0.2 2,089,639 + Dsui_1980 0.77 +0.2 2,089,662 - Dsui_1980 0.82 +1.2 2,089,674 - Dsui_1980 0.84 +1.2 2,089,698 + Dsui_1980 0.89 +0.2 2,089,752 - +0.2 2,089,763 - +1.2 2,089,773 - -1.8 2,089,784 + -0.4 2,089,875 - +1.2 2,089,876 - +0.2 2,089,876 - +1.2 2,089,923 + -0.5 2,089,939 - +1.2 2,089,966 + -1.1 2,090,011 + Dsui_1981 0.11 -0.3 2,090,024 - Dsui_1981 0.12 +1.2 2,090,026 + Dsui_1981 0.12 +0.9 2,090,029 - +1.2 2,090,029 - +1.2 2,090,029 - Dsui_1981 0.12 +1.2 2,090,039 - Dsui_1981 0.13 -1.1 2,090,124 - Dsui_1981 0.19 +1.2 2,090,185 - Dsui_1981 0.24 -0.4 2,090,193 + Dsui_1981 0.25 -0.5 2,090,201 + Dsui_1981 0.25 -0.9 2,090,207 + Dsui_1981 0.26 +0.1 2,090,225 - Dsui_1981 0.27 +0.2 2,090,446 + Dsui_1981 0.44 +1.4 2,090,472 - Dsui_1981 0.46 +1.2 2,090,543 + Dsui_1981 0.52 +0.9 2,090,543 + Dsui_1981 0.52 -3.7 2,090,551 - Dsui_1981 0.52 -0.4 2,090,564 - Dsui_1981 0.53 -0.8 2,090,564 - Dsui_1981 0.53 +1.2 2,090,587 + Dsui_1981 0.55 +0.2 2,090,587 + Dsui_1981 0.55 +0.3 2,090,587 + Dsui_1981 0.55 +0.3 2,090,595 - Dsui_1981 0.56 +1.2 2,090,595 - Dsui_1981 0.56 +1.2 2,090,595 - Dsui_1981 0.56 +1.2 2,090,596 + Dsui_1981 0.56 +0.1 2,090,597 + Dsui_1981 0.56 +0.9 2,090,706 - Dsui_1981 0.64 +0.2 2,090,739 - Dsui_1981 0.67 +1.2 2,090,758 + Dsui_1981 0.68 -3.3 2,090,822 + Dsui_1981 0.73 -0.3 2,090,900 - Dsui_1981 0.79 +0.2 2,090,989 - +1.2 2,091,002 - Dsui_1981 0.87 +0.2 2,091,007 - Dsui_1981 0.88 +1.2 2,091,058 + +0.5 2,091,061 - +1.2 2,091,066 - +0.2 2,091,119 + -0.7 2,091,135 - +0.2 2,091,142 + +1.2 2,091,150 - +1.2 2,091,228 + +1.2 2,091,241 + +1.2 2,091,339 - -0.3 2,091,347 - +0.1
Or see this region's nucleotide sequence