Strain Fitness in Dechlorosoma suillum PS around Dsui_1981

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1980 and Dsui_1981 are separated by 123 nucleotidesDsui_1981 and Dsui_1982 are separated by 170 nucleotides Dsui_1980: Dsui_1980 - hypothetical protein, at 2,089,275 to 2,089,748 _1980 Dsui_1981: Dsui_1981 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 2,089,872 to 2,091,167 _1981 Dsui_1982: Dsui_1982 - sulfate adenylyltransferase, large subunit, at 2,091,338 to 2,092,612 _1982 Position (kb) 2089 2090 2091 2092Strain fitness (log2 ratio) -3 -2 -1 0 1at 2089.161 kb on - strandat 2089.179 kb on + strandat 2089.234 kb on - strandat 2089.234 kb on - strandat 2089.289 kb on + strandat 2089.311 kb on - strandat 2089.350 kb on - strand, within Dsui_1980at 2089.350 kb on - strand, within Dsui_1980at 2089.410 kb on + strand, within Dsui_1980at 2089.471 kb on - strand, within Dsui_1980at 2089.482 kb on - strand, within Dsui_1980at 2089.549 kb on - strandat 2089.569 kb on + strandat 2089.570 kb on - strand, within Dsui_1980at 2089.610 kb on + strand, within Dsui_1980at 2089.627 kb on - strand, within Dsui_1980at 2089.639 kb on + strand, within Dsui_1980at 2089.662 kb on - strand, within Dsui_1980at 2089.674 kb on - strand, within Dsui_1980at 2089.698 kb on + strand, within Dsui_1980at 2089.752 kb on - strandat 2089.763 kb on - strandat 2089.773 kb on - strandat 2089.784 kb on + strandat 2089.875 kb on - strandat 2089.876 kb on - strandat 2089.876 kb on - strandat 2089.923 kb on + strandat 2089.939 kb on - strandat 2089.966 kb on + strandat 2090.011 kb on + strand, within Dsui_1981at 2090.024 kb on - strand, within Dsui_1981at 2090.026 kb on + strand, within Dsui_1981at 2090.029 kb on - strandat 2090.029 kb on - strandat 2090.029 kb on - strand, within Dsui_1981at 2090.039 kb on - strand, within Dsui_1981at 2090.124 kb on - strand, within Dsui_1981at 2090.185 kb on - strand, within Dsui_1981at 2090.193 kb on + strand, within Dsui_1981at 2090.201 kb on + strand, within Dsui_1981at 2090.207 kb on + strand, within Dsui_1981at 2090.225 kb on - strand, within Dsui_1981at 2090.446 kb on + strand, within Dsui_1981at 2090.472 kb on - strand, within Dsui_1981at 2090.543 kb on + strand, within Dsui_1981at 2090.543 kb on + strand, within Dsui_1981at 2090.551 kb on - strand, within Dsui_1981at 2090.564 kb on - strand, within Dsui_1981at 2090.564 kb on - strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.587 kb on + strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.595 kb on - strand, within Dsui_1981at 2090.596 kb on + strand, within Dsui_1981at 2090.597 kb on + strand, within Dsui_1981at 2090.706 kb on - strand, within Dsui_1981at 2090.739 kb on - strand, within Dsui_1981at 2090.758 kb on + strand, within Dsui_1981at 2090.822 kb on + strand, within Dsui_1981at 2090.900 kb on - strand, within Dsui_1981at 2090.989 kb on - strandat 2091.002 kb on - strand, within Dsui_1981at 2091.007 kb on - strand, within Dsui_1981at 2091.058 kb on + strandat 2091.061 kb on - strandat 2091.066 kb on - strandat 2091.119 kb on + strandat 2091.135 kb on - strandat 2091.142 kb on + strandat 2091.150 kb on - strandat 2091.228 kb on + strandat 2091.241 kb on + strandat 2091.339 kb on - strandat 2091.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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2,089,161 - -2.9
2,089,179 + +1.2
2,089,234 - -0.8
2,089,234 - +1.2
2,089,289 + +0.2
2,089,311 - +0.2
2,089,350 - Dsui_1980 0.16 +1.2
2,089,350 - Dsui_1980 0.16 -0.8
2,089,410 + Dsui_1980 0.28 +1.2
2,089,471 - Dsui_1980 0.41 +1.2
2,089,482 - Dsui_1980 0.44 -1.1
2,089,549 - +0.2
2,089,569 + +1.2
2,089,570 - Dsui_1980 0.62 +0.2
2,089,610 + Dsui_1980 0.71 +1.2
2,089,627 - Dsui_1980 0.74 +0.2
2,089,639 + Dsui_1980 0.77 +0.2
2,089,662 - Dsui_1980 0.82 +1.2
2,089,674 - Dsui_1980 0.84 +1.2
2,089,698 + Dsui_1980 0.89 +0.2
2,089,752 - +0.2
2,089,763 - +1.2
2,089,773 - -1.8
2,089,784 + -0.4
2,089,875 - +1.2
2,089,876 - +0.2
2,089,876 - +1.2
2,089,923 + -0.5
2,089,939 - +1.2
2,089,966 + -1.1
2,090,011 + Dsui_1981 0.11 -0.3
2,090,024 - Dsui_1981 0.12 +1.2
2,090,026 + Dsui_1981 0.12 +0.9
2,090,029 - +1.2
2,090,029 - +1.2
2,090,029 - Dsui_1981 0.12 +1.2
2,090,039 - Dsui_1981 0.13 -1.1
2,090,124 - Dsui_1981 0.19 +1.2
2,090,185 - Dsui_1981 0.24 -0.4
2,090,193 + Dsui_1981 0.25 -0.5
2,090,201 + Dsui_1981 0.25 -0.9
2,090,207 + Dsui_1981 0.26 +0.1
2,090,225 - Dsui_1981 0.27 +0.2
2,090,446 + Dsui_1981 0.44 +1.4
2,090,472 - Dsui_1981 0.46 +1.2
2,090,543 + Dsui_1981 0.52 +0.9
2,090,543 + Dsui_1981 0.52 -3.7
2,090,551 - Dsui_1981 0.52 -0.4
2,090,564 - Dsui_1981 0.53 -0.8
2,090,564 - Dsui_1981 0.53 +1.2
2,090,587 + Dsui_1981 0.55 +0.2
2,090,587 + Dsui_1981 0.55 +0.3
2,090,587 + Dsui_1981 0.55 +0.3
2,090,595 - Dsui_1981 0.56 +1.2
2,090,595 - Dsui_1981 0.56 +1.2
2,090,595 - Dsui_1981 0.56 +1.2
2,090,596 + Dsui_1981 0.56 +0.1
2,090,597 + Dsui_1981 0.56 +0.9
2,090,706 - Dsui_1981 0.64 +0.2
2,090,739 - Dsui_1981 0.67 +1.2
2,090,758 + Dsui_1981 0.68 -3.3
2,090,822 + Dsui_1981 0.73 -0.3
2,090,900 - Dsui_1981 0.79 +0.2
2,090,989 - +1.2
2,091,002 - Dsui_1981 0.87 +0.2
2,091,007 - Dsui_1981 0.88 +1.2
2,091,058 + +0.5
2,091,061 - +1.2
2,091,066 - +0.2
2,091,119 + -0.7
2,091,135 - +0.2
2,091,142 + +1.2
2,091,150 - +1.2
2,091,228 + +1.2
2,091,241 + +1.2
2,091,339 - -0.3
2,091,347 - +0.1

Or see this region's nucleotide sequence