Strain Fitness in Dechlorosoma suillum PS around Dsui_1809

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1806 and Dsui_1807 are separated by 101 nucleotidesDsui_1807 and Dsui_1809 are separated by 385 nucleotidesDsui_1809 and Dsui_1810 are separated by 15 nucleotidesDsui_1810 and Dsui_1811 overlap by 1 nucleotides Dsui_1806: Dsui_1806 - 23S ribosomal RNA, at 1,903,438 to 1,906,319 _1806 Dsui_1807: Dsui_1807 - 5S ribosomal RNA, at 1,906,421 to 1,906,534 _1807 Dsui_1809: Dsui_1809 - DNA polymerase III, subunit gamma/tau, at 1,906,920 to 1,908,566 _1809 Dsui_1810: Dsui_1810 - DNA-binding protein, YbaB/EbfC family, at 1,908,582 to 1,908,905 _1810 Dsui_1811: Dsui_1811 - recombination protein RecR, at 1,908,905 to 1,909,507 _1811 Position (kb) 1906 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1at 1906.553 kb on + strandat 1906.554 kb on + strandat 1906.564 kb on + strandat 1906.604 kb on + strandat 1906.658 kb on - strandat 1906.715 kb on - strandat 1908.608 kb on + strandat 1908.645 kb on - strandat 1908.647 kb on + strand, within Dsui_1810at 1908.657 kb on + strand, within Dsui_1810at 1908.657 kb on + strand, within Dsui_1810at 1908.683 kb on - strand, within Dsui_1810at 1908.841 kb on - strand, within Dsui_1810at 1908.868 kb on + strand, within Dsui_1810at 1908.868 kb on + strand, within Dsui_1810at 1908.876 kb on - strandat 1908.904 kb on - strandat 1908.934 kb on + strandat 1908.942 kb on - strandat 1908.982 kb on + strand, within Dsui_1811at 1909.089 kb on - strand, within Dsui_1811at 1909.097 kb on - strand, within Dsui_1811at 1909.097 kb on - strand, within Dsui_1811at 1909.192 kb on + strand, within Dsui_1811at 1909.195 kb on - strand, within Dsui_1811at 1909.223 kb on + strand, within Dsui_1811at 1909.474 kb on + strandat 1909.476 kb on - strandat 1909.539 kb on + strandat 1909.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,906,553 + +0.7
1,906,554 + +0.2
1,906,564 + +0.4
1,906,604 + -0.1
1,906,658 - +0.1
1,906,715 - +0.1
1,908,608 + -0.8
1,908,645 - +0.1
1,908,647 + Dsui_1810 0.20 -2.0
1,908,657 + Dsui_1810 0.23 -1.5
1,908,657 + Dsui_1810 0.23 -1.0
1,908,683 - Dsui_1810 0.31 -0.5
1,908,841 - Dsui_1810 0.80 +1.1
1,908,868 + Dsui_1810 0.88 -1.1
1,908,868 + Dsui_1810 0.88 -0.6
1,908,876 - +0.1
1,908,904 - -0.5
1,908,934 + -0.5
1,908,942 - -0.5
1,908,982 + Dsui_1811 0.13 -0.1
1,909,089 - Dsui_1811 0.31 -0.5
1,909,097 - Dsui_1811 0.32 +0.1
1,909,097 - Dsui_1811 0.32 -0.9
1,909,192 + Dsui_1811 0.48 -0.4
1,909,195 - Dsui_1811 0.48 +1.1
1,909,223 + Dsui_1811 0.53 -0.0
1,909,474 + -0.1
1,909,476 - -2.7
1,909,539 + -0.4
1,909,541 - +0.2

Or see this region's nucleotide sequence