Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1749 and Dsui_1750 are separated by 13 nucleotides Dsui_1750 and Dsui_1751 are separated by 64 nucleotides Dsui_1751 and Dsui_1752 are separated by 60 nucleotides Dsui_1752 and Dsui_1753 are separated by 49 nucleotides
Dsui_1749: Dsui_1749 - flagellar motor switch protein FliM, at 1,835,886 to 1,836,890
_1749
Dsui_1750: Dsui_1750 - flagellar basal body-associated protein, at 1,836,904 to 1,837,434
_1750
Dsui_1751: Dsui_1751 - flagellar hook-length control protein, at 1,837,499 to 1,838,620
_1751
Dsui_1752: Dsui_1752 - flagellar export protein FliJ, at 1,838,681 to 1,839,133
_1752
Dsui_1753: Dsui_1753 - flagellar protein export ATPase FliI, at 1,839,183 to 1,840,598
_1753
Position (kb)
1837
1838
1839 Strain fitness (log2 ratio)
-2
-1
0
1 at 1836.535 kb on - strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.543 kb on + strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.556 kb on - strand, within Dsui_1749 at 1836.565 kb on + strand, within Dsui_1749 at 1836.589 kb on - strand, within Dsui_1749 at 1836.643 kb on - strand, within Dsui_1749 at 1836.679 kb on - strand, within Dsui_1749 at 1836.689 kb on - strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.725 kb on + strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.733 kb on - strand, within Dsui_1749 at 1836.766 kb on + strand, within Dsui_1749 at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.841 kb on + strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.849 kb on - strand at 1836.879 kb on + strand at 1836.950 kb on + strand at 1836.957 kb on - strand, within Dsui_1750 at 1837.086 kb on + strand, within Dsui_1750 at 1837.132 kb on - strand, within Dsui_1750 at 1837.142 kb on - strand, within Dsui_1750 at 1837.177 kb on - strand, within Dsui_1750 at 1837.318 kb on - strand, within Dsui_1750 at 1837.432 kb on - strand at 1837.441 kb on - strand at 1837.444 kb on - strand at 1837.451 kb on - strand at 1837.496 kb on + strand at 1837.501 kb on + strand at 1837.513 kb on + strand at 1837.516 kb on - strand at 1837.517 kb on - strand at 1837.517 kb on - strand at 1837.591 kb on - strand at 1837.596 kb on - strand at 1837.630 kb on - strand, within Dsui_1751 at 1837.640 kb on - strand, within Dsui_1751 at 1837.681 kb on + strand at 1837.706 kb on - strand, within Dsui_1751 at 1837.718 kb on - strand, within Dsui_1751 at 1837.762 kb on + strand, within Dsui_1751 at 1837.765 kb on - strand, within Dsui_1751 at 1837.775 kb on - strand, within Dsui_1751 at 1837.787 kb on - strand, within Dsui_1751 at 1837.787 kb on - strand, within Dsui_1751 at 1837.820 kb on - strand, within Dsui_1751 at 1837.829 kb on - strand, within Dsui_1751 at 1837.829 kb on - strand, within Dsui_1751 at 1837.845 kb on - strand, within Dsui_1751 at 1837.927 kb on - strand, within Dsui_1751 at 1837.976 kb on + strand, within Dsui_1751 at 1838.061 kb on - strand, within Dsui_1751 at 1838.065 kb on + strand, within Dsui_1751 at 1838.132 kb on + strand, within Dsui_1751 at 1838.132 kb on + strand, within Dsui_1751 at 1838.167 kb on + strand, within Dsui_1751 at 1838.321 kb on + strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.322 kb on - strand, within Dsui_1751 at 1838.510 kb on + strand at 1838.605 kb on + strand at 1838.613 kb on - strand at 1838.613 kb on - strand at 1838.703 kb on + strand at 1838.850 kb on + strand at 1838.850 kb on + strand, within Dsui_1752 at 1838.948 kb on + strand, within Dsui_1752 at 1839.032 kb on - strand, within Dsui_1752 at 1839.147 kb on - strand at 1839.167 kb on - strand at 1839.241 kb on + strand at 1839.242 kb on + strand at 1839.250 kb on - strand at 1839.312 kb on - strand at 1839.347 kb on + strand at 1839.347 kb on + strand at 1839.347 kb on + strand, within Dsui_1753 at 1839.355 kb on - strand, within Dsui_1753 at 1839.378 kb on - strand, within Dsui_1753 at 1839.380 kb on + strand at 1839.397 kb on + strand, within Dsui_1753 at 1839.398 kb on - strand, within Dsui_1753 at 1839.407 kb on + strand, within Dsui_1753 at 1839.422 kb on + strand, within Dsui_1753 at 1839.430 kb on - strand, within Dsui_1753 at 1839.496 kb on - strand, within Dsui_1753 at 1839.531 kb on - strand, within Dsui_1753 at 1839.566 kb on + strand, within Dsui_1753 at 1839.577 kb on + strand, within Dsui_1753 at 1839.585 kb on - strand, within Dsui_1753
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 1,836,535 - Dsui_1749 0.65 +0.1 1,836,543 + Dsui_1749 0.65 +1.0 1,836,543 + Dsui_1749 0.65 -1.0 1,836,543 + Dsui_1749 0.65 +1.0 1,836,556 - Dsui_1749 0.67 -1.1 1,836,556 - Dsui_1749 0.67 -1.0 1,836,565 + Dsui_1749 0.68 -0.6 1,836,589 - Dsui_1749 0.70 -0.9 1,836,643 - Dsui_1749 0.75 -1.4 1,836,679 - Dsui_1749 0.79 -0.0 1,836,689 - Dsui_1749 0.80 -0.2 1,836,725 + Dsui_1749 0.83 +1.0 1,836,725 + Dsui_1749 0.83 -1.3 1,836,733 - Dsui_1749 0.84 -0.1 1,836,733 - Dsui_1749 0.84 -0.5 1,836,733 - Dsui_1749 0.84 -0.2 1,836,733 - Dsui_1749 0.84 +0.2 1,836,733 - Dsui_1749 0.84 -0.1 1,836,733 - Dsui_1749 0.84 -0.0 1,836,733 - Dsui_1749 0.84 -0.1 1,836,766 + Dsui_1749 0.88 -0.0 1,836,841 + -1.3 1,836,841 + +1.0 1,836,841 + +1.0 1,836,849 - -0.5 1,836,849 - -0.5 1,836,849 - +0.0 1,836,849 - -0.9 1,836,849 - -0.3 1,836,849 - +0.0 1,836,849 - -0.0 1,836,879 + -1.3 1,836,950 + -0.6 1,836,957 - Dsui_1750 0.10 -1.1 1,837,086 + Dsui_1750 0.34 -0.6 1,837,132 - Dsui_1750 0.43 +0.1 1,837,142 - Dsui_1750 0.45 -0.0 1,837,177 - Dsui_1750 0.51 -0.8 1,837,318 - Dsui_1750 0.78 -0.7 1,837,432 - +0.1 1,837,441 - -0.4 1,837,444 - -0.3 1,837,451 - +0.4 1,837,496 + -0.6 1,837,501 + -0.0 1,837,513 + +1.0 1,837,516 - +0.0 1,837,517 - -0.3 1,837,517 - +0.4 1,837,591 - -1.3 1,837,596 - -1.3 1,837,630 - Dsui_1751 0.12 -1.3 1,837,640 - Dsui_1751 0.13 -0.0 1,837,681 + +1.0 1,837,706 - Dsui_1751 0.18 -2.2 1,837,718 - Dsui_1751 0.20 +1.0 1,837,762 + Dsui_1751 0.23 +1.0 1,837,765 - Dsui_1751 0.24 +1.0 1,837,775 - Dsui_1751 0.25 +1.0 1,837,787 - Dsui_1751 0.26 -0.6 1,837,787 - Dsui_1751 0.26 +1.0 1,837,820 - Dsui_1751 0.29 -0.0 1,837,829 - Dsui_1751 0.29 +1.0 1,837,829 - Dsui_1751 0.29 +1.0 1,837,845 - Dsui_1751 0.31 -0.0 1,837,927 - Dsui_1751 0.38 -2.6 1,837,976 + Dsui_1751 0.43 +1.0 1,838,061 - Dsui_1751 0.50 -0.0 1,838,065 + Dsui_1751 0.50 -0.0 1,838,132 + Dsui_1751 0.56 -0.0 1,838,132 + Dsui_1751 0.56 -0.0 1,838,167 + Dsui_1751 0.60 +1.0 1,838,321 + Dsui_1751 0.73 +1.0 1,838,322 - Dsui_1751 0.73 +1.0 1,838,322 - Dsui_1751 0.73 -1.6 1,838,322 - Dsui_1751 0.73 +1.0 1,838,510 + +1.0 1,838,605 + +0.0 1,838,613 - +1.0 1,838,613 - +1.0 1,838,703 + -1.0 1,838,850 + -0.6 1,838,850 + Dsui_1752 0.37 +0.0 1,838,948 + Dsui_1752 0.59 +0.0 1,839,032 - Dsui_1752 0.77 +0.0 1,839,147 - -1.2 1,839,167 - +0.6 1,839,241 + +1.0 1,839,242 + -0.6 1,839,250 - +0.0 1,839,312 - -1.2 1,839,347 + +1.0 1,839,347 + +1.0 1,839,347 + Dsui_1753 0.12 -0.6 1,839,355 - Dsui_1753 0.12 -2.4 1,839,378 - Dsui_1753 0.14 -0.8 1,839,380 + -0.6 1,839,397 + Dsui_1753 0.15 -1.0 1,839,398 - Dsui_1753 0.15 -0.4 1,839,407 + Dsui_1753 0.16 -1.0 1,839,422 + Dsui_1753 0.17 -1.3 1,839,430 - Dsui_1753 0.17 -0.1 1,839,496 - Dsui_1753 0.22 -0.6 1,839,531 - Dsui_1753 0.25 -2.6 1,839,566 + Dsui_1753 0.27 +1.0 1,839,577 + Dsui_1753 0.28 -1.0 1,839,585 - Dsui_1753 0.28 +0.6
Or see this region's nucleotide sequence