Strain Fitness in Dechlorosoma suillum PS around Dsui_1751

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1749 and Dsui_1750 are separated by 13 nucleotidesDsui_1750 and Dsui_1751 are separated by 64 nucleotidesDsui_1751 and Dsui_1752 are separated by 60 nucleotidesDsui_1752 and Dsui_1753 are separated by 49 nucleotides Dsui_1749: Dsui_1749 - flagellar motor switch protein FliM, at 1,835,886 to 1,836,890 _1749 Dsui_1750: Dsui_1750 - flagellar basal body-associated protein, at 1,836,904 to 1,837,434 _1750 Dsui_1751: Dsui_1751 - flagellar hook-length control protein, at 1,837,499 to 1,838,620 _1751 Dsui_1752: Dsui_1752 - flagellar export protein FliJ, at 1,838,681 to 1,839,133 _1752 Dsui_1753: Dsui_1753 - flagellar protein export ATPase FliI, at 1,839,183 to 1,840,598 _1753 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -2 -1 0 1at 1836.535 kb on - strand, within Dsui_1749at 1836.543 kb on + strand, within Dsui_1749at 1836.543 kb on + strand, within Dsui_1749at 1836.543 kb on + strand, within Dsui_1749at 1836.556 kb on - strand, within Dsui_1749at 1836.556 kb on - strand, within Dsui_1749at 1836.565 kb on + strand, within Dsui_1749at 1836.589 kb on - strand, within Dsui_1749at 1836.643 kb on - strand, within Dsui_1749at 1836.679 kb on - strand, within Dsui_1749at 1836.689 kb on - strand, within Dsui_1749at 1836.725 kb on + strand, within Dsui_1749at 1836.725 kb on + strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.733 kb on - strand, within Dsui_1749at 1836.766 kb on + strand, within Dsui_1749at 1836.841 kb on + strandat 1836.841 kb on + strandat 1836.841 kb on + strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.849 kb on - strandat 1836.879 kb on + strandat 1836.950 kb on + strandat 1836.957 kb on - strand, within Dsui_1750at 1837.086 kb on + strand, within Dsui_1750at 1837.132 kb on - strand, within Dsui_1750at 1837.142 kb on - strand, within Dsui_1750at 1837.177 kb on - strand, within Dsui_1750at 1837.318 kb on - strand, within Dsui_1750at 1837.432 kb on - strandat 1837.441 kb on - strandat 1837.444 kb on - strandat 1837.451 kb on - strandat 1837.496 kb on + strandat 1837.501 kb on + strandat 1837.513 kb on + strandat 1837.516 kb on - strandat 1837.517 kb on - strandat 1837.517 kb on - strandat 1837.591 kb on - strandat 1837.596 kb on - strandat 1837.630 kb on - strand, within Dsui_1751at 1837.640 kb on - strand, within Dsui_1751at 1837.681 kb on + strandat 1837.706 kb on - strand, within Dsui_1751at 1837.718 kb on - strand, within Dsui_1751at 1837.762 kb on + strand, within Dsui_1751at 1837.765 kb on - strand, within Dsui_1751at 1837.775 kb on - strand, within Dsui_1751at 1837.787 kb on - strand, within Dsui_1751at 1837.787 kb on - strand, within Dsui_1751at 1837.820 kb on - strand, within Dsui_1751at 1837.829 kb on - strand, within Dsui_1751at 1837.829 kb on - strand, within Dsui_1751at 1837.845 kb on - strand, within Dsui_1751at 1837.927 kb on - strand, within Dsui_1751at 1837.976 kb on + strand, within Dsui_1751at 1838.061 kb on - strand, within Dsui_1751at 1838.065 kb on + strand, within Dsui_1751at 1838.132 kb on + strand, within Dsui_1751at 1838.132 kb on + strand, within Dsui_1751at 1838.167 kb on + strand, within Dsui_1751at 1838.321 kb on + strand, within Dsui_1751at 1838.322 kb on - strand, within Dsui_1751at 1838.322 kb on - strand, within Dsui_1751at 1838.322 kb on - strand, within Dsui_1751at 1838.510 kb on + strandat 1838.605 kb on + strandat 1838.613 kb on - strandat 1838.613 kb on - strandat 1838.703 kb on + strandat 1838.850 kb on + strandat 1838.850 kb on + strand, within Dsui_1752at 1838.948 kb on + strand, within Dsui_1752at 1839.032 kb on - strand, within Dsui_1752at 1839.147 kb on - strandat 1839.167 kb on - strandat 1839.241 kb on + strandat 1839.242 kb on + strandat 1839.250 kb on - strandat 1839.312 kb on - strandat 1839.347 kb on + strandat 1839.347 kb on + strandat 1839.347 kb on + strand, within Dsui_1753at 1839.355 kb on - strand, within Dsui_1753at 1839.378 kb on - strand, within Dsui_1753at 1839.380 kb on + strandat 1839.397 kb on + strand, within Dsui_1753at 1839.398 kb on - strand, within Dsui_1753at 1839.407 kb on + strand, within Dsui_1753at 1839.422 kb on + strand, within Dsui_1753at 1839.430 kb on - strand, within Dsui_1753at 1839.496 kb on - strand, within Dsui_1753at 1839.531 kb on - strand, within Dsui_1753at 1839.566 kb on + strand, within Dsui_1753at 1839.577 kb on + strand, within Dsui_1753at 1839.585 kb on - strand, within Dsui_1753

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,836,535 - Dsui_1749 0.65 +0.1
1,836,543 + Dsui_1749 0.65 +1.0
1,836,543 + Dsui_1749 0.65 -1.0
1,836,543 + Dsui_1749 0.65 +1.0
1,836,556 - Dsui_1749 0.67 -1.1
1,836,556 - Dsui_1749 0.67 -1.0
1,836,565 + Dsui_1749 0.68 -0.6
1,836,589 - Dsui_1749 0.70 -0.9
1,836,643 - Dsui_1749 0.75 -1.4
1,836,679 - Dsui_1749 0.79 -0.0
1,836,689 - Dsui_1749 0.80 -0.2
1,836,725 + Dsui_1749 0.83 +1.0
1,836,725 + Dsui_1749 0.83 -1.3
1,836,733 - Dsui_1749 0.84 -0.1
1,836,733 - Dsui_1749 0.84 -0.5
1,836,733 - Dsui_1749 0.84 -0.2
1,836,733 - Dsui_1749 0.84 +0.2
1,836,733 - Dsui_1749 0.84 -0.1
1,836,733 - Dsui_1749 0.84 -0.0
1,836,733 - Dsui_1749 0.84 -0.1
1,836,766 + Dsui_1749 0.88 -0.0
1,836,841 + -1.3
1,836,841 + +1.0
1,836,841 + +1.0
1,836,849 - -0.5
1,836,849 - -0.5
1,836,849 - +0.0
1,836,849 - -0.9
1,836,849 - -0.3
1,836,849 - +0.0
1,836,849 - -0.0
1,836,879 + -1.3
1,836,950 + -0.6
1,836,957 - Dsui_1750 0.10 -1.1
1,837,086 + Dsui_1750 0.34 -0.6
1,837,132 - Dsui_1750 0.43 +0.1
1,837,142 - Dsui_1750 0.45 -0.0
1,837,177 - Dsui_1750 0.51 -0.8
1,837,318 - Dsui_1750 0.78 -0.7
1,837,432 - +0.1
1,837,441 - -0.4
1,837,444 - -0.3
1,837,451 - +0.4
1,837,496 + -0.6
1,837,501 + -0.0
1,837,513 + +1.0
1,837,516 - +0.0
1,837,517 - -0.3
1,837,517 - +0.4
1,837,591 - -1.3
1,837,596 - -1.3
1,837,630 - Dsui_1751 0.12 -1.3
1,837,640 - Dsui_1751 0.13 -0.0
1,837,681 + +1.0
1,837,706 - Dsui_1751 0.18 -2.2
1,837,718 - Dsui_1751 0.20 +1.0
1,837,762 + Dsui_1751 0.23 +1.0
1,837,765 - Dsui_1751 0.24 +1.0
1,837,775 - Dsui_1751 0.25 +1.0
1,837,787 - Dsui_1751 0.26 -0.6
1,837,787 - Dsui_1751 0.26 +1.0
1,837,820 - Dsui_1751 0.29 -0.0
1,837,829 - Dsui_1751 0.29 +1.0
1,837,829 - Dsui_1751 0.29 +1.0
1,837,845 - Dsui_1751 0.31 -0.0
1,837,927 - Dsui_1751 0.38 -2.6
1,837,976 + Dsui_1751 0.43 +1.0
1,838,061 - Dsui_1751 0.50 -0.0
1,838,065 + Dsui_1751 0.50 -0.0
1,838,132 + Dsui_1751 0.56 -0.0
1,838,132 + Dsui_1751 0.56 -0.0
1,838,167 + Dsui_1751 0.60 +1.0
1,838,321 + Dsui_1751 0.73 +1.0
1,838,322 - Dsui_1751 0.73 +1.0
1,838,322 - Dsui_1751 0.73 -1.6
1,838,322 - Dsui_1751 0.73 +1.0
1,838,510 + +1.0
1,838,605 + +0.0
1,838,613 - +1.0
1,838,613 - +1.0
1,838,703 + -1.0
1,838,850 + -0.6
1,838,850 + Dsui_1752 0.37 +0.0
1,838,948 + Dsui_1752 0.59 +0.0
1,839,032 - Dsui_1752 0.77 +0.0
1,839,147 - -1.2
1,839,167 - +0.6
1,839,241 + +1.0
1,839,242 + -0.6
1,839,250 - +0.0
1,839,312 - -1.2
1,839,347 + +1.0
1,839,347 + +1.0
1,839,347 + Dsui_1753 0.12 -0.6
1,839,355 - Dsui_1753 0.12 -2.4
1,839,378 - Dsui_1753 0.14 -0.8
1,839,380 + -0.6
1,839,397 + Dsui_1753 0.15 -1.0
1,839,398 - Dsui_1753 0.15 -0.4
1,839,407 + Dsui_1753 0.16 -1.0
1,839,422 + Dsui_1753 0.17 -1.3
1,839,430 - Dsui_1753 0.17 -0.1
1,839,496 - Dsui_1753 0.22 -0.6
1,839,531 - Dsui_1753 0.25 -2.6
1,839,566 + Dsui_1753 0.27 +1.0
1,839,577 + Dsui_1753 0.28 -1.0
1,839,585 - Dsui_1753 0.28 +0.6

Or see this region's nucleotide sequence