Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1655 and Dsui_1656 are separated by 10 nucleotides Dsui_1656 and Dsui_1657 are separated by 9 nucleotides Dsui_1657 and Dsui_1658 are separated by 3 nucleotides Dsui_1658 and Dsui_1659 are separated by 350 nucleotides
Dsui_1655: Dsui_1655 - high-affinity Fe2+/Pb2+ permease, at 1,738,075 to 1,738,932
_1655
Dsui_1656: Dsui_1656 - hypothetical protein, at 1,738,943 to 1,739,290
_1656
Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850
_1657
Dsui_1658: Dsui_1658 - uncharacterized protein probably involved in high-affinity Fe2+ transport, at 1,740,854 to 1,741,405
_1658
Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075
_1659
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-2
-1
0
1 at 1738.313 kb on - strand, within Dsui_1655 at 1738.464 kb on - strand, within Dsui_1655 at 1738.495 kb on + strand, within Dsui_1655 at 1738.522 kb on + strand, within Dsui_1655 at 1738.524 kb on - strand, within Dsui_1655 at 1738.730 kb on - strand, within Dsui_1655 at 1738.742 kb on + strand, within Dsui_1655 at 1738.779 kb on - strand, within Dsui_1655 at 1738.838 kb on - strand, within Dsui_1655 at 1738.864 kb on - strand at 1738.934 kb on + strand at 1738.935 kb on - strand at 1738.977 kb on + strand at 1738.987 kb on + strand at 1739.059 kb on - strand, within Dsui_1656 at 1739.100 kb on - strand, within Dsui_1656 at 1739.100 kb on - strand, within Dsui_1656 at 1739.100 kb on - strand, within Dsui_1656 at 1739.157 kb on - strand, within Dsui_1656 at 1739.340 kb on + strand at 1739.368 kb on + strand at 1739.391 kb on - strand at 1739.554 kb on + strand at 1739.855 kb on + strand, within Dsui_1657 at 1739.909 kb on + strand, within Dsui_1657 at 1739.917 kb on - strand, within Dsui_1657 at 1740.182 kb on - strand, within Dsui_1657 at 1740.274 kb on + strand, within Dsui_1657 at 1740.338 kb on - strand, within Dsui_1657 at 1740.418 kb on + strand at 1740.480 kb on + strand at 1740.480 kb on + strand, within Dsui_1657 at 1740.488 kb on - strand, within Dsui_1657 at 1740.506 kb on - strand, within Dsui_1657 at 1740.513 kb on + strand, within Dsui_1657 at 1740.521 kb on - strand, within Dsui_1657 at 1740.571 kb on - strand, within Dsui_1657 at 1740.572 kb on - strand, within Dsui_1657 at 1740.616 kb on + strand at 1740.659 kb on - strand, within Dsui_1657 at 1740.723 kb on + strand at 1740.840 kb on - strand at 1740.854 kb on - strand at 1740.913 kb on + strand, within Dsui_1658 at 1740.920 kb on - strand, within Dsui_1658 at 1741.014 kb on - strand, within Dsui_1658 at 1741.118 kb on - strand, within Dsui_1658 at 1741.132 kb on + strand, within Dsui_1658 at 1741.196 kb on - strand, within Dsui_1658 at 1741.309 kb on - strand, within Dsui_1658 at 1741.354 kb on - strand at 1741.402 kb on - strand at 1741.575 kb on + strand at 1741.575 kb on + strand at 1741.580 kb on + strand at 1741.700 kb on - strand at 1741.702 kb on + strand at 1741.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 1,738,313 - Dsui_1655 0.28 -0.2 1,738,464 - Dsui_1655 0.45 -1.3 1,738,495 + Dsui_1655 0.49 -0.0 1,738,522 + Dsui_1655 0.52 -0.0 1,738,524 - Dsui_1655 0.52 -0.1 1,738,730 - Dsui_1655 0.76 -0.7 1,738,742 + Dsui_1655 0.78 -1.6 1,738,779 - Dsui_1655 0.82 -0.0 1,738,838 - Dsui_1655 0.89 +0.4 1,738,864 - -0.1 1,738,934 + -0.6 1,738,935 - -0.0 1,738,977 + +1.0 1,738,987 + +1.0 1,739,059 - Dsui_1656 0.33 +0.1 1,739,100 - Dsui_1656 0.45 -0.1 1,739,100 - Dsui_1656 0.45 -0.1 1,739,100 - Dsui_1656 0.45 +0.6 1,739,157 - Dsui_1656 0.61 -0.4 1,739,340 + -1.8 1,739,368 + +1.0 1,739,391 - -0.5 1,739,554 + +1.0 1,739,855 + Dsui_1657 0.36 +1.0 1,739,909 + Dsui_1657 0.39 -0.0 1,739,917 - Dsui_1657 0.40 -0.1 1,740,182 - Dsui_1657 0.57 +0.2 1,740,274 + Dsui_1657 0.63 -0.6 1,740,338 - Dsui_1657 0.67 +0.8 1,740,418 + -1.0 1,740,480 + +1.0 1,740,480 + Dsui_1657 0.76 -0.4 1,740,488 - Dsui_1657 0.77 +0.6 1,740,506 - Dsui_1657 0.78 +0.2 1,740,513 + Dsui_1657 0.78 -0.6 1,740,521 - Dsui_1657 0.79 -0.1 1,740,571 - Dsui_1657 0.82 -0.4 1,740,572 - Dsui_1657 0.82 +0.2 1,740,616 + -0.0 1,740,659 - Dsui_1657 0.88 -0.7 1,740,723 + +1.0 1,740,840 - -0.0 1,740,854 - -0.5 1,740,913 + Dsui_1658 0.11 -0.0 1,740,920 - Dsui_1658 0.12 -0.0 1,741,014 - Dsui_1658 0.29 +0.2 1,741,118 - Dsui_1658 0.48 +0.3 1,741,132 + Dsui_1658 0.50 +1.0 1,741,196 - Dsui_1658 0.62 -0.2 1,741,309 - Dsui_1658 0.82 -0.1 1,741,354 - +0.3 1,741,402 - -0.4 1,741,575 + +1.0 1,741,575 + +1.0 1,741,580 + +1.0 1,741,700 - -0.0 1,741,702 + -0.6 1,741,747 - +1.0
Or see this region's nucleotide sequence