Strain Fitness in Dechlorosoma suillum PS around Dsui_1657

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1655 and Dsui_1656 are separated by 10 nucleotidesDsui_1656 and Dsui_1657 are separated by 9 nucleotidesDsui_1657 and Dsui_1658 are separated by 3 nucleotidesDsui_1658 and Dsui_1659 are separated by 350 nucleotides Dsui_1655: Dsui_1655 - high-affinity Fe2+/Pb2+ permease, at 1,738,075 to 1,738,932 _1655 Dsui_1656: Dsui_1656 - hypothetical protein, at 1,738,943 to 1,739,290 _1656 Dsui_1657: Dsui_1657 - carbohydrate-selective porin, at 1,739,300 to 1,740,850 _1657 Dsui_1658: Dsui_1658 - uncharacterized protein probably involved in high-affinity Fe2+ transport, at 1,740,854 to 1,741,405 _1658 Dsui_1659: Dsui_1659 - Uncharacterized protein conserved in bacteria (DUF2325), at 1,741,756 to 1,743,075 _1659 Position (kb) 1739 1740 1741Strain fitness (log2 ratio) -2 -1 0 1at 1738.313 kb on - strand, within Dsui_1655at 1738.464 kb on - strand, within Dsui_1655at 1738.495 kb on + strand, within Dsui_1655at 1738.522 kb on + strand, within Dsui_1655at 1738.524 kb on - strand, within Dsui_1655at 1738.730 kb on - strand, within Dsui_1655at 1738.742 kb on + strand, within Dsui_1655at 1738.779 kb on - strand, within Dsui_1655at 1738.838 kb on - strand, within Dsui_1655at 1738.864 kb on - strandat 1738.934 kb on + strandat 1738.935 kb on - strandat 1738.977 kb on + strandat 1738.987 kb on + strandat 1739.059 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.100 kb on - strand, within Dsui_1656at 1739.157 kb on - strand, within Dsui_1656at 1739.340 kb on + strandat 1739.368 kb on + strandat 1739.391 kb on - strandat 1739.554 kb on + strandat 1739.855 kb on + strand, within Dsui_1657at 1739.909 kb on + strand, within Dsui_1657at 1739.917 kb on - strand, within Dsui_1657at 1740.182 kb on - strand, within Dsui_1657at 1740.274 kb on + strand, within Dsui_1657at 1740.338 kb on - strand, within Dsui_1657at 1740.418 kb on + strandat 1740.480 kb on + strandat 1740.480 kb on + strand, within Dsui_1657at 1740.488 kb on - strand, within Dsui_1657at 1740.506 kb on - strand, within Dsui_1657at 1740.513 kb on + strand, within Dsui_1657at 1740.521 kb on - strand, within Dsui_1657at 1740.571 kb on - strand, within Dsui_1657at 1740.572 kb on - strand, within Dsui_1657at 1740.616 kb on + strandat 1740.659 kb on - strand, within Dsui_1657at 1740.723 kb on + strandat 1740.840 kb on - strandat 1740.854 kb on - strandat 1740.913 kb on + strand, within Dsui_1658at 1740.920 kb on - strand, within Dsui_1658at 1741.014 kb on - strand, within Dsui_1658at 1741.118 kb on - strand, within Dsui_1658at 1741.132 kb on + strand, within Dsui_1658at 1741.196 kb on - strand, within Dsui_1658at 1741.309 kb on - strand, within Dsui_1658at 1741.354 kb on - strandat 1741.402 kb on - strandat 1741.575 kb on + strandat 1741.575 kb on + strandat 1741.580 kb on + strandat 1741.700 kb on - strandat 1741.702 kb on + strandat 1741.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,738,313 - Dsui_1655 0.28 -0.2
1,738,464 - Dsui_1655 0.45 -1.3
1,738,495 + Dsui_1655 0.49 -0.0
1,738,522 + Dsui_1655 0.52 -0.0
1,738,524 - Dsui_1655 0.52 -0.1
1,738,730 - Dsui_1655 0.76 -0.7
1,738,742 + Dsui_1655 0.78 -1.6
1,738,779 - Dsui_1655 0.82 -0.0
1,738,838 - Dsui_1655 0.89 +0.4
1,738,864 - -0.1
1,738,934 + -0.6
1,738,935 - -0.0
1,738,977 + +1.0
1,738,987 + +1.0
1,739,059 - Dsui_1656 0.33 +0.1
1,739,100 - Dsui_1656 0.45 -0.1
1,739,100 - Dsui_1656 0.45 -0.1
1,739,100 - Dsui_1656 0.45 +0.6
1,739,157 - Dsui_1656 0.61 -0.4
1,739,340 + -1.8
1,739,368 + +1.0
1,739,391 - -0.5
1,739,554 + +1.0
1,739,855 + Dsui_1657 0.36 +1.0
1,739,909 + Dsui_1657 0.39 -0.0
1,739,917 - Dsui_1657 0.40 -0.1
1,740,182 - Dsui_1657 0.57 +0.2
1,740,274 + Dsui_1657 0.63 -0.6
1,740,338 - Dsui_1657 0.67 +0.8
1,740,418 + -1.0
1,740,480 + +1.0
1,740,480 + Dsui_1657 0.76 -0.4
1,740,488 - Dsui_1657 0.77 +0.6
1,740,506 - Dsui_1657 0.78 +0.2
1,740,513 + Dsui_1657 0.78 -0.6
1,740,521 - Dsui_1657 0.79 -0.1
1,740,571 - Dsui_1657 0.82 -0.4
1,740,572 - Dsui_1657 0.82 +0.2
1,740,616 + -0.0
1,740,659 - Dsui_1657 0.88 -0.7
1,740,723 + +1.0
1,740,840 - -0.0
1,740,854 - -0.5
1,740,913 + Dsui_1658 0.11 -0.0
1,740,920 - Dsui_1658 0.12 -0.0
1,741,014 - Dsui_1658 0.29 +0.2
1,741,118 - Dsui_1658 0.48 +0.3
1,741,132 + Dsui_1658 0.50 +1.0
1,741,196 - Dsui_1658 0.62 -0.2
1,741,309 - Dsui_1658 0.82 -0.1
1,741,354 - +0.3
1,741,402 - -0.4
1,741,575 + +1.0
1,741,575 + +1.0
1,741,580 + +1.0
1,741,700 - -0.0
1,741,702 + -0.6
1,741,747 - +1.0

Or see this region's nucleotide sequence