Experiment: ALP with Nickel (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1398 and Dsui_1399 overlap by 8 nucleotides Dsui_1399 and Dsui_1400 overlap by 1 nucleotides Dsui_1400 and Dsui_1401 are separated by 83 nucleotides Dsui_1401 and Dsui_1402 are separated by 97 nucleotides
Dsui_1398: Dsui_1398 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 1,458,929 to 1,459,750
_1398
Dsui_1399: Dsui_1399 - conserved hypothetical integral membrane protein, at 1,459,743 to 1,460,525
_1399
Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995
_1400
Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798
_1401
Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525
_1402
Position (kb)
1460
1461 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1459.562 kb on - strand at 1459.638 kb on + strand, within Dsui_1398 at 1459.729 kb on + strand at 1459.730 kb on - strand at 1459.737 kb on - strand at 1459.737 kb on - strand at 1459.837 kb on + strand, within Dsui_1399 at 1459.855 kb on - strand at 1459.856 kb on - strand at 1459.864 kb on + strand, within Dsui_1399 at 1459.896 kb on + strand, within Dsui_1399 at 1459.961 kb on - strand at 1460.072 kb on + strand, within Dsui_1399 at 1460.123 kb on + strand, within Dsui_1399 at 1460.123 kb on + strand, within Dsui_1399 at 1460.131 kb on - strand, within Dsui_1399 at 1460.199 kb on + strand, within Dsui_1399 at 1460.217 kb on + strand, within Dsui_1399 at 1460.229 kb on + strand, within Dsui_1399 at 1460.255 kb on + strand, within Dsui_1399 at 1460.450 kb on + strand at 1460.471 kb on + strand at 1460.486 kb on + strand at 1460.496 kb on - strand at 1460.529 kb on + strand at 1460.529 kb on + strand at 1460.529 kb on + strand at 1460.590 kb on - strand, within Dsui_1400 at 1460.684 kb on - strand, within Dsui_1400 at 1460.747 kb on + strand, within Dsui_1400 at 1460.780 kb on + strand, within Dsui_1400 at 1460.837 kb on - strand, within Dsui_1400 at 1460.856 kb on - strand, within Dsui_1400 at 1460.859 kb on + strand, within Dsui_1400 at 1460.863 kb on + strand, within Dsui_1400 at 1460.867 kb on - strand, within Dsui_1400 at 1460.949 kb on + strand at 1460.986 kb on - strand at 1461.062 kb on - strand at 1461.095 kb on - strand at 1461.099 kb on + strand at 1461.120 kb on + strand at 1461.120 kb on + strand at 1461.150 kb on - strand at 1461.190 kb on + strand, within Dsui_1401 at 1461.191 kb on - strand, within Dsui_1401 at 1461.228 kb on + strand, within Dsui_1401 at 1461.240 kb on + strand, within Dsui_1401 at 1461.284 kb on - strand at 1461.291 kb on + strand, within Dsui_1401 at 1461.637 kb on - strand at 1461.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM remove 1,459,562 - +0.9 1,459,638 + Dsui_1398 0.86 -5.2 1,459,729 + -0.5 1,459,730 - +0.9 1,459,737 - +0.9 1,459,737 - +0.9 1,459,837 + Dsui_1399 0.12 -2.9 1,459,855 - -0.1 1,459,856 - +0.9 1,459,864 + Dsui_1399 0.15 -3.0 1,459,896 + Dsui_1399 0.20 -6.4 1,459,961 - +0.9 1,460,072 + Dsui_1399 0.42 -3.3 1,460,123 + Dsui_1399 0.49 -5.5 1,460,123 + Dsui_1399 0.49 -3.6 1,460,131 - Dsui_1399 0.50 +0.9 1,460,199 + Dsui_1399 0.58 -2.9 1,460,217 + Dsui_1399 0.61 -3.9 1,460,229 + Dsui_1399 0.62 -4.4 1,460,255 + Dsui_1399 0.65 -3.2 1,460,450 + -3.1 1,460,471 + -2.9 1,460,486 + -2.8 1,460,496 - +0.9 1,460,529 + -5.6 1,460,529 + -4.8 1,460,529 + -4.7 1,460,590 - Dsui_1400 0.14 -1.7 1,460,684 - Dsui_1400 0.34 -0.7 1,460,747 + Dsui_1400 0.47 -3.1 1,460,780 + Dsui_1400 0.54 -5.2 1,460,837 - Dsui_1400 0.66 +0.9 1,460,856 - Dsui_1400 0.70 +0.9 1,460,859 + Dsui_1400 0.71 -4.3 1,460,863 + Dsui_1400 0.72 -6.4 1,460,867 - Dsui_1400 0.73 +0.9 1,460,949 + -5.8 1,460,986 - -0.1 1,461,062 - +0.9 1,461,095 - +0.9 1,461,099 + -1.0 1,461,120 + -5.5 1,461,120 + -4.2 1,461,150 - -0.1 1,461,190 + Dsui_1401 0.15 -5.0 1,461,191 - Dsui_1401 0.16 +0.9 1,461,228 + Dsui_1401 0.21 -4.3 1,461,240 + Dsui_1401 0.22 -5.1 1,461,284 - +0.9 1,461,291 + Dsui_1401 0.29 -5.9 1,461,637 - +0.9 1,461,879 + -1.8
Or see this region's nucleotide sequence