Strain Fitness in Dechlorosoma suillum PS around Dsui_1377

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1375 and Dsui_1376 are separated by 131 nucleotidesDsui_1376 and Dsui_1377 are separated by 218 nucleotidesDsui_1377 and Dsui_1378 are separated by 281 nucleotides Dsui_1375: Dsui_1375 - putative nuleotide-utilizing enzyme, moeA, at 1,432,011 to 1,432,799 _1375 Dsui_1376: Dsui_1376 - phasin family protein, at 1,432,931 to 1,433,488 _1376 Dsui_1377: Dsui_1377 - phasin family protein, at 1,433,707 to 1,434,282 _1377 Dsui_1378: Dsui_1378 - enoyl-CoA hydratase/carnithine racemase, at 1,434,564 to 1,435,340 _1378 Position (kb) 1433 1434 1435Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1432.823 kb on + strandat 1432.900 kb on - strandat 1433.089 kb on - strand, within Dsui_1376at 1433.164 kb on + strand, within Dsui_1376at 1433.245 kb on - strand, within Dsui_1376at 1433.252 kb on - strand, within Dsui_1376at 1433.269 kb on + strand, within Dsui_1376at 1433.278 kb on - strand, within Dsui_1376at 1433.285 kb on - strand, within Dsui_1376at 1433.323 kb on + strand, within Dsui_1376at 1433.410 kb on - strand, within Dsui_1376at 1433.412 kb on + strand, within Dsui_1376at 1433.412 kb on + strand, within Dsui_1376at 1433.419 kb on - strand, within Dsui_1376at 1433.419 kb on - strand, within Dsui_1376at 1433.420 kb on - strand, within Dsui_1376at 1433.457 kb on + strandat 1433.457 kb on + strandat 1433.457 kb on + strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.495 kb on + strandat 1433.507 kb on + strandat 1433.522 kb on - strandat 1433.531 kb on - strandat 1433.531 kb on - strandat 1433.570 kb on + strandat 1433.570 kb on + strandat 1433.621 kb on - strandat 1433.621 kb on - strandat 1433.648 kb on + strandat 1433.704 kb on + strandat 1433.814 kb on + strand, within Dsui_1377at 1434.050 kb on + strand, within Dsui_1377at 1434.058 kb on - strand, within Dsui_1377at 1434.070 kb on + strandat 1434.116 kb on + strandat 1434.124 kb on - strand, within Dsui_1377at 1434.258 kb on + strandat 1434.266 kb on - strandat 1434.285 kb on - strandat 1434.299 kb on - strandat 1434.299 kb on - strandat 1434.572 kb on + strandat 1434.583 kb on + strandat 1434.673 kb on + strand, within Dsui_1378at 1434.674 kb on - strand, within Dsui_1378at 1434.796 kb on + strand, within Dsui_1378at 1434.864 kb on - strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.882 kb on - strand, within Dsui_1378at 1434.883 kb on - strand, within Dsui_1378at 1434.936 kb on - strand, within Dsui_1378at 1434.961 kb on - strand, within Dsui_1378at 1435.030 kb on - strand, within Dsui_1378at 1435.099 kb on + strand, within Dsui_1378at 1435.127 kb on - strand, within Dsui_1378

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,432,823 + -0.1
1,432,900 - -0.5
1,433,089 - Dsui_1376 0.28 -0.6
1,433,164 + Dsui_1376 0.42 +0.4
1,433,245 - Dsui_1376 0.56 +0.2
1,433,252 - Dsui_1376 0.58 +0.4
1,433,269 + Dsui_1376 0.61 -1.2
1,433,278 - Dsui_1376 0.62 -0.7
1,433,285 - Dsui_1376 0.63 +0.1
1,433,323 + Dsui_1376 0.70 -0.7
1,433,410 - Dsui_1376 0.86 +0.5
1,433,412 + Dsui_1376 0.86 +0.7
1,433,412 + Dsui_1376 0.86 -0.1
1,433,419 - Dsui_1376 0.87 -0.1
1,433,419 - Dsui_1376 0.87 -0.2
1,433,420 - Dsui_1376 0.88 +0.2
1,433,457 + +0.6
1,433,457 + -0.7
1,433,457 + -3.2
1,433,465 - -0.9
1,433,465 - +0.3
1,433,465 - -0.4
1,433,465 - +0.3
1,433,495 + -2.3
1,433,507 + -1.6
1,433,522 - +0.2
1,433,531 - -0.7
1,433,531 - -0.7
1,433,570 + -0.9
1,433,570 + -1.1
1,433,621 - +0.1
1,433,621 - -0.2
1,433,648 + -0.5
1,433,704 + +1.9
1,433,814 + Dsui_1377 0.19 -0.7
1,434,050 + Dsui_1377 0.60 +0.9
1,434,058 - Dsui_1377 0.61 +1.4
1,434,070 + +0.9
1,434,116 + +0.9
1,434,124 - Dsui_1377 0.72 +1.6
1,434,258 + +0.9
1,434,266 - +1.7
1,434,285 - +0.8
1,434,299 - +1.2
1,434,299 - +1.2
1,434,572 + -0.1
1,434,583 + +0.9
1,434,673 + Dsui_1378 0.14 +0.9
1,434,674 - Dsui_1378 0.14 -0.0
1,434,796 + Dsui_1378 0.30 -0.1
1,434,864 - Dsui_1378 0.39 -0.3
1,434,874 + Dsui_1378 0.40 +0.9
1,434,874 + Dsui_1378 0.40 -1.9
1,434,874 + Dsui_1378 0.40 -0.1
1,434,882 - Dsui_1378 0.41 -0.3
1,434,883 - Dsui_1378 0.41 -0.1
1,434,936 - Dsui_1378 0.48 -0.2
1,434,961 - Dsui_1378 0.51 -0.2
1,435,030 - Dsui_1378 0.60 -0.2
1,435,099 + Dsui_1378 0.69 -0.1
1,435,127 - Dsui_1378 0.72 -0.2

Or see this region's nucleotide sequence