Strain Fitness in Dechlorosoma suillum PS around Dsui_1284

Experiment: ALP with Nickel (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1281 and Dsui_1282 are separated by 24 nucleotidesDsui_1282 and Dsui_1283 are separated by 23 nucleotidesDsui_1283 and Dsui_1284 overlap by 14 nucleotidesDsui_1284 and Dsui_1285 overlap by 4 nucleotidesDsui_1285 and Dsui_1286 overlap by 4 nucleotides Dsui_1281: Dsui_1281 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,331 to 1,343,867 _1281 Dsui_1282: Dsui_1282 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,343,892 to 1,344,338 _1282 Dsui_1283: Dsui_1283 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,344,362 to 1,344,838 _1283 Dsui_1284: Dsui_1284 - hypothetical protein, at 1,344,825 to 1,345,418 _1284 Dsui_1285: Dsui_1285 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,345,415 to 1,346,239 _1285 Dsui_1286: Dsui_1286 - hypothetical protein, at 1,346,236 to 1,346,712 _1286 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1343.852 kb on + strandat 1343.852 kb on + strandat 1343.910 kb on + strandat 1343.911 kb on + strandat 1343.911 kb on + strandat 1343.919 kb on - strandat 1343.919 kb on - strandat 1343.919 kb on - strandat 1343.921 kb on + strandat 1343.921 kb on + strandat 1343.928 kb on - strandat 1343.929 kb on - strandat 1343.983 kb on - strand, within Dsui_1282at 1344.088 kb on - strand, within Dsui_1282at 1344.088 kb on - strand, within Dsui_1282at 1344.127 kb on - strand, within Dsui_1282at 1344.152 kb on - strand, within Dsui_1282at 1344.199 kb on - strand, within Dsui_1282at 1344.201 kb on + strand, within Dsui_1282at 1344.258 kb on - strand, within Dsui_1282at 1344.283 kb on - strand, within Dsui_1282at 1344.285 kb on - strand, within Dsui_1282at 1344.285 kb on - strand, within Dsui_1282at 1344.402 kb on + strandat 1344.435 kb on - strand, within Dsui_1283at 1344.696 kb on + strand, within Dsui_1283at 1344.696 kb on + strand, within Dsui_1283at 1344.731 kb on + strand, within Dsui_1283at 1344.739 kb on - strand, within Dsui_1283at 1344.739 kb on - strand, within Dsui_1283at 1344.775 kb on - strand, within Dsui_1283at 1344.779 kb on + strand, within Dsui_1283at 1344.792 kb on - strandat 1344.820 kb on - strandat 1344.856 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1344.883 kb on + strandat 1345.002 kb on + strand, within Dsui_1284at 1345.003 kb on + strand, within Dsui_1284at 1345.010 kb on - strand, within Dsui_1284at 1345.011 kb on - strand, within Dsui_1284at 1345.054 kb on + strand, within Dsui_1284at 1345.065 kb on + strand, within Dsui_1284at 1345.065 kb on + strand, within Dsui_1284at 1345.101 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.106 kb on + strand, within Dsui_1284at 1345.109 kb on - strand, within Dsui_1284at 1345.109 kb on - strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.111 kb on + strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.119 kb on - strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.121 kb on + strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.129 kb on - strand, within Dsui_1284at 1345.144 kb on - strand, within Dsui_1284at 1345.326 kb on + strand, within Dsui_1284at 1345.330 kb on - strand, within Dsui_1284at 1345.339 kb on - strand, within Dsui_1284at 1345.451 kb on - strandat 1345.451 kb on - strandat 1345.451 kb on - strandat 1345.504 kb on + strand, within Dsui_1285at 1345.558 kb on - strand, within Dsui_1285at 1345.564 kb on + strand, within Dsui_1285at 1345.596 kb on - strand, within Dsui_1285at 1345.603 kb on + strand, within Dsui_1285at 1345.621 kb on + strand, within Dsui_1285at 1345.621 kb on + strand, within Dsui_1285at 1345.764 kb on + strand, within Dsui_1285at 1345.766 kb on - strand, within Dsui_1285at 1345.808 kb on - strand, within Dsui_1285at 1345.897 kb on - strand, within Dsui_1285at 1345.917 kb on - strand, within Dsui_1285at 1345.953 kb on + strand, within Dsui_1285at 1346.040 kb on - strand, within Dsui_1285at 1346.047 kb on + strand, within Dsui_1285at 1346.050 kb on - strand, within Dsui_1285at 1346.075 kb on - strand, within Dsui_1285at 1346.137 kb on + strand, within Dsui_1285at 1346.327 kb on + strand, within Dsui_1286at 1346.358 kb on - strand, within Dsui_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 2.5 mM
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1,343,852 + -0.9
1,343,852 + -1.2
1,343,910 + +0.3
1,343,911 + +0.3
1,343,911 + +0.2
1,343,919 - +0.9
1,343,919 - -0.7
1,343,919 - -1.1
1,343,921 + +0.4
1,343,921 + +0.1
1,343,928 - +0.9
1,343,929 - -0.1
1,343,983 - Dsui_1282 0.20 -0.7
1,344,088 - Dsui_1282 0.44 +0.9
1,344,088 - Dsui_1282 0.44 -0.1
1,344,127 - Dsui_1282 0.53 -0.7
1,344,152 - Dsui_1282 0.58 -0.7
1,344,199 - Dsui_1282 0.69 -0.7
1,344,201 + Dsui_1282 0.69 -4.0
1,344,258 - Dsui_1282 0.82 +0.9
1,344,283 - Dsui_1282 0.87 -1.7
1,344,285 - Dsui_1282 0.88 -0.1
1,344,285 - Dsui_1282 0.88 -0.1
1,344,402 + -0.1
1,344,435 - Dsui_1283 0.15 +0.9
1,344,696 + Dsui_1283 0.70 +0.3
1,344,696 + Dsui_1283 0.70 +0.1
1,344,731 + Dsui_1283 0.77 -1.0
1,344,739 - Dsui_1283 0.79 +0.9
1,344,739 - Dsui_1283 0.79 -3.3
1,344,775 - Dsui_1283 0.87 +1.3
1,344,779 + Dsui_1283 0.87 -0.5
1,344,792 - +0.9
1,344,820 - -0.7
1,344,856 + +1.2
1,344,883 + +0.2
1,344,883 + +0.2
1,344,883 + +0.2
1,344,883 + -0.1
1,344,883 + +0.7
1,345,002 + Dsui_1284 0.30 -0.3
1,345,003 + Dsui_1284 0.30 -1.0
1,345,010 - Dsui_1284 0.31 -1.7
1,345,011 - Dsui_1284 0.31 -0.7
1,345,054 + Dsui_1284 0.39 -0.6
1,345,065 + Dsui_1284 0.40 +0.1
1,345,065 + Dsui_1284 0.40 -0.3
1,345,101 + Dsui_1284 0.46 -0.4
1,345,106 + Dsui_1284 0.47 -0.3
1,345,106 + Dsui_1284 0.47 -2.6
1,345,106 + Dsui_1284 0.47 +0.1
1,345,109 - Dsui_1284 0.48 +0.9
1,345,109 - Dsui_1284 0.48 -1.7
1,345,111 + Dsui_1284 0.48 -0.5
1,345,111 + Dsui_1284 0.48 +0.1
1,345,111 + Dsui_1284 0.48 -0.2
1,345,119 - Dsui_1284 0.49 +0.9
1,345,119 - Dsui_1284 0.49 +0.9
1,345,119 - Dsui_1284 0.49 -1.7
1,345,119 - Dsui_1284 0.49 -1.1
1,345,119 - Dsui_1284 0.49 -1.7
1,345,119 - Dsui_1284 0.49 -0.1
1,345,119 - Dsui_1284 0.49 -0.1
1,345,121 + Dsui_1284 0.50 -0.8
1,345,121 + Dsui_1284 0.50 -0.1
1,345,121 + Dsui_1284 0.50 +0.1
1,345,129 - Dsui_1284 0.51 -0.1
1,345,129 - Dsui_1284 0.51 -1.1
1,345,129 - Dsui_1284 0.51 -1.9
1,345,129 - Dsui_1284 0.51 -2.4
1,345,129 - Dsui_1284 0.51 -1.9
1,345,129 - Dsui_1284 0.51 -1.9
1,345,144 - Dsui_1284 0.54 +0.9
1,345,326 + Dsui_1284 0.84 -0.2
1,345,330 - Dsui_1284 0.85 -1.7
1,345,339 - Dsui_1284 0.87 -1.1
1,345,451 - +0.9
1,345,451 - +0.9
1,345,451 - -1.4
1,345,504 + Dsui_1285 0.11 -0.2
1,345,558 - Dsui_1285 0.17 -0.1
1,345,564 + Dsui_1285 0.18 -1.0
1,345,596 - Dsui_1285 0.22 +1.3
1,345,603 + Dsui_1285 0.23 -0.8
1,345,621 + Dsui_1285 0.25 +0.8
1,345,621 + Dsui_1285 0.25 -0.3
1,345,764 + Dsui_1285 0.42 -0.4
1,345,766 - Dsui_1285 0.43 -1.1
1,345,808 - Dsui_1285 0.48 -0.1
1,345,897 - Dsui_1285 0.58 +0.4
1,345,917 - Dsui_1285 0.61 +0.9
1,345,953 + Dsui_1285 0.65 +0.1
1,346,040 - Dsui_1285 0.76 -1.1
1,346,047 + Dsui_1285 0.77 +0.7
1,346,050 - Dsui_1285 0.77 +0.9
1,346,075 - Dsui_1285 0.80 -0.1
1,346,137 + Dsui_1285 0.88 -0.0
1,346,327 + Dsui_1286 0.19 -0.2
1,346,358 - Dsui_1286 0.26 +0.9

Or see this region's nucleotide sequence